RNA id: XM_039780158.1


Basic Information

Item Value
RNA id XM_039780158.1
length 2794
RNA type mRNA
GC content 0.53
exon number 10
gene id glis3
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 19177139 ~ 19193398 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCGAGTCAAGGGCAAAGGGGTTAGCGTGTGAGAGAAAAGAAGTTCCTGGAAACCACAGAGGAGTGAGGTGGGACGCGGCGGTTCAAACTCAAAGATTCCTCAGAGGCTTGACTTCTCTGCTCAGTGCACAGCCATCACAAACTCTGAGAGCAACACGGCAGTTGGTGTCATCCAGATAACATTCACAGCTCGGCGGATTGAAGGAGCCATTCATTCTGACATGTAACTTTGGGGAAAGTGTTTGCGACAACAGCAATAGGTATGAGCAGTGGATTTTTATATCCTGTGTAAAGCAAATTTAGCAAACTGCAGCTACTTGAAACAACTTCCTCATAAGCTCAGAACTATTGACGACTTTGCTTCAGCCATGAGTGGAAAGGGTTGTCAGCTCCTGGTGTCTCCTTGCAGCGTGTCCCCGTCACTAAGTATGATCAGAGGACACCAGTCCCAGTCCATCAGGATACCCATGTCTTTCCCACAACGGGCCGATCTTAGTCCCTCCTCGAGCATGGAGAAAGTGAAAAGGGGTGCCATGCAATCCTTTGCTTCTGAAAAACAGAGTGGAAGCCATGTTGTCCTGCCAACCCTGAGCCTCCGCAGACAGGTGTTGACCAACGGCAAACATATAAACATTTCGACTGAATCCCCACACCAGCAAGTGCCTACTTACCATCCTACAACCACCATACAGACGGGACGCTGCTCCTTTAACAACAGCTTCAAAGGTACAAACAAAGCAGGTTGCTCTGTGTCTGGGCCTACCATGGAAGTATTTGGTCAGCCAGCCACTGCTAACCTGACAGTGACCAGCAGTCCTGTGACCCTTGTCAAAGGCCAACGGTGTACTGCAGGGCCGTCAGCACAACACCCTCCATCACATCCACACAGTGTGCAGATTCCCCACACTGATGCCAGATCCTTACAGTCCAGAGAGTCCCTGGCATCCACTACCCTTAGTCTGTTTGAAACACAGTCGATGTTTAGTGGCAGACATGACTGGTCGCATGGCTACCGGGTGCTTCCTCCACTGGGTCTACCTCAGTGCTCCACGCAGGCCAGTGAGGGAGGTGAGCAGCCCAGCCTTCCTCCCGGCACAGCCATGTCTGGCACGACCATATCAGGTGACACTAGCACCTCTGCCTCCCTGCCCTCGTATCTCTTTGCAGGTGATGCCGGAAGCCCCAGACAGTCTCGTGCTAAGAAGAGAGCTCTTTCCATGTCGCCATTGTCGGATGTCATGGGTATTGATTTCAACTCAATCATACGCACCTCACCGACTTCACTTGTTGCTTATATCAATGGTTCTCGGATCTCTCCAGCCTCCCACCCCACACTCTCACCTGTCCAATCTGAGGGTTACGGTCACTTCCTGGGCGTGAGAGGCCGCTGCATCCCCTACGCCCATCCCTACAGCATGCCAGGCTCTTTGCAGGCCTCGGCCCCACACACAGATTATGGTCGTATGCAGATGCTTGAAGAGGGAGGAGGTCTGGAGAGCCAGATGGCTAACATGGTGGTGGACCAGCAGTGCCTCCCAGAGGAAGGAGGGGCACTGGAGAAGACTTCAGAGAGCTGCAGCCAAACCATCATCAACCTGCTGCCACCTCCACAGTTTCAGCCAGCCCTGCTGACTACTATCCAAGAAGCTGATACTCTACATGGGCCTCCACCACCCTACCACTCACACCAGCACATCCACCTTACTAGacactgtaaaataaagcctCCTTCTCAGGACCCTCTCACACACGCTCCCATGGTTCATCCCAGGCATGGGGTGAGCTTTCTACCGCAGGTCCCTATgctggaggaagaagaaggagagcTGGAGGACTATGGAGCCCACAGCTGCAGGTGGATAGACTGCAGTGCAGTCTATGACCAAAGGGAGGAGCTGGTAAGGCACATAGAAAAGCAACATGTGGACCAGCGGAAGGCTGAGGATTTCACATGCCACTGGGTGGGCTGTCCACGCAACTTCAAGCCCTTCAATGCCCGATACAAGCTTCTTATCCACATGAGGGTCCATTCAGGAGAAAAACCCAACAAGTGCACGTTTGAGGGCTGCAAGAAGGCTTTCTCTCGGCTAGAAAATCTGAAGATCCATCTGCGTAGCCACACGGGGGAGAAACCCTACCTGTGTCAGCACCCAGGCTGTCACAAGGCCTTCAGCAACTCAAGTGACAGAGCTAAGCACCAGCGTACACACCTGGACACAAAGCCATACACTTGCCAGGTGCCTGGCTGTGCAAAGCGTTATACTGATCCCAGCTCCCTGAGGAAACATGTGAAATCCCACTCTACTAAAGAACGACAGTTACGGAAGAAGATGAAATCCACTGCTGATGTGACTCAGGACACGCTGACAGACTGTTTAACCATCCACCCTTTGCAACCAAGCCTTTCTCCTCTGACAAGGATAGACTTGAACTCTTCCCCTGGTGCATCCCATGAGTCCTATTCTGCTGCTCCACAGGGACGAGACTCCTCCAGCAATCCTCACCTGGCTCTGTTATGCTCCTTACAAGATAATTACAGCTCCTCCCCGGGGACCAGCGTGGTCCTTGCTCTCCCACCTGCCTCCCGCATCCTCCCAATGGGACATCCCTACAGAAAAACCCAGATCTGAAGCAGCCCAGCGAGCCTCCTGATCTGGCAGATTACAATCCAGAGCTCTCAGGGCAGATTAAGATGCTATATTCTCCTCCACAATATGGCGGGATCACGGCACAGACTAGCTCGAGTCACCTGATGCAAGTTGATGCCTTTGGTGACAGCCTCGCTCCAGCAGTC

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238220 lncRNA upstream 322591 18851078 ~ 18854548 (+) True G175973
TU238221 lncRNA upstream 340385 18836175 ~ 18836754 (+) True G175974
TU238139 lncRNA upstream 490411 18676044 ~ 18686728 (+) False srsf9
TU238127 lncRNA upstream 503174 18670383 ~ 18673965 (+) True G175925
TU238118 lncRNA upstream 518855 18657690 ~ 18658284 (+) True G175917
TU238449 lncRNA downstream 207221 19399170 ~ 19402367 (+) False LOC120545529
TU238472 lncRNA downstream 296361 19488310 ~ 19492082 (+) True G176173
TU238477 lncRNA downstream 304087 19496036 ~ 19502184 (+) True G176177
TU238529 lncRNA downstream 371297 19563246 ~ 19565919 (+) True G176225
TU238530 lncRNA downstream 374990 19566939 ~ 19567169 (+) True G176226
XM_039779258.1 mRNA upstream 210814 18906742 ~ 18966325 (+) True bmpr1bb
XM_039779259.1 mRNA upstream 210814 18906742 ~ 18966325 (+) False bmpr1bb
XM_039780060.1 mRNA upstream 271277 18868353 ~ 18905862 (+) False pdlim5b
XM_039780161.1 mRNA downstream 3707 19195656 ~ 19213465 (+) False rfx3
XM_039780159.1 mRNA downstream 3708 19195657 ~ 19213465 (+) True rfx3
XM_039780160.1 mRNA downstream 3708 19195657 ~ 19213465 (+) False rfx3
XM_039780486.1 mRNA downstream 81448 19273397 ~ 19274633 (+) True LOC120545863
XM_039780434.1 mRNA downstream 127023 19318972 ~ 19322239 (+) True mlana
TU238143 other upstream 453354 18676044 ~ 18723785 (+) True srsf9
TU238138 other upstream 490411 18676044 ~ 18686728 (+) False srsf9
TU238154 other upstream 490411 18676044 ~ 18686728 (+) False srsf9
XR_005636603.1 other upstream 628998 18536631 ~ 18548141 (+) True myo1hb
TU237773 other upstream 1099637 18076239 ~ 18077502 (+) False LOC120545364
TU238450 other downstream 188328 19380277 ~ 19387442 (+) False LOC120545529
unassigned_transcript_963 other downstream 325286 19517235 ~ 19517306 (+) True trnac-gca_32
TU238926 other downstream 1754735 20946684 ~ 20947055 (+) True G176526
TU239244 other downstream 3086931 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 3304464 22496413 ~ 22524368 (+) True LOC120545252

Expression Profile