RNA id: XM_039780365.1


Basic Information

Item Value
RNA id XM_039780365.1
length 3548
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC120545786
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 7188195 ~ 7274967 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGCGTCAACCCTCCACCCCTCGAGGAAGCCGAGCGACATCCATCAGAGTCGTTGCAATCTCAGAGGCACTCTCGAGCACTTCTCAGGCGGCGCTCCGCTGAACACTTCACCGGGTCGTCACGTCGAGCTCCGGCCAGGTCTCGGTGATCTCTGGCGGGTTTCCCCTCTCCTTCAGAACTGTGGGAGAGATGCGACGTctcggaggaggaggagaccaactggccaagcagcagcagcaacagcagcagcagcagcacacacctGCGAGCAGGGTCTGAGTTTGTTTCGATAACGTCAAAGAAAGGTATTTTGCGGGCATCACTATGACTGATGGGGATTATGACTACCTTATAAAGCTCCTTGCCCTGGGGGACTCTGGCGTGGGGAAGACCACCTTCTTGTACCGATACACAGACAACAAGTTCAACCCCAAGTTCATCACCACAGTCGGCATCGACTTCAGGGAAAAGAGAGTGGTGTACACAGCGTCCAACCCCAATGGGGCAACCACGGGGAAAACCTTCAAGGTTCACCTTCAGCTCTGGGACACAGCTGGACAGGAGAGGTTCCGCAGCCTGACAACGGCGTTCTTCAGGGACGCCATGGGGTTCCTGCTGATGTTTGATCTCACCAGCCAGCAGAGCTTCCTCAATGTCAGAAACTGGATGAGCCAGCTGCAAGCCAATGCCTACTGTGAGAATCCAGATATTGTGTTAATAGGAAACAAGGCGGATCTGGCCGACCAGCGCGAGGTTCAGGAGAAACAGGCCAAGGAGCTGGCTGATAAATATGGGATTCCGTACTTTGAGACGAGTGCAGCGACAGGTGCGGAGGTTGACAAGGCGGTCATAACGCTGTTGGACCTGGTCATGAAGAGGATGGAGCAGTGCGTCGACAAACCGCCCGCTGAGCCAGCCAATGGGAACGGGGCCACAAAGCTCGCTGATGCGCAGCCCAATGAGAAGAAATGTGCATGCTAGATGAAGAAGGCAACGACCAGTCAGCGCTCCTCTGTCCGTCTGTCCTTTCTACTCGCAACATTCCCTCCTTCTTTTACCTTCGCCGTCATCTTTTGATTGCATGTGTCTTCATCTTCTCCTGTTCACTTACTTCTCTTTAAAACTAACCTTTGACCATCTTCTGGTACTCTTTAatttctccttctttctcctcccAAAGTGTCTGCCAGAGGGCAATGAAACAACCCTGCCCCCCTCTAGTGGATATTCGAGGTAATACAGTCTCAGCCTGTCTGCCTTTGAGCTCTGTTTAGGAGGAAATGAAAACAGGAGGGGACAGTTTCATCACTGTCAGACACAAAATGTGCCTCGTTTAAAACATGCAGCCTGGGAATTAAGCCCTGCACACTTCCAATTTGTCTGCTCGCAAGTGGTTTGAATGATTTAAATGGATCTACACAGGCAAAAGGAgttgtttaaaacttttaatttgAACTCCTTAACTGATCATCACTTCTAACAGGGGAAAAATGTTGCGTCCTGTTTAGTCTGTCACTTGATGACGACAGCCTGATCCGGATCGTTAAGAGTTTAACAGCTGTGTGCCTGTGTACATTAAATCATGGTCCTCTCCTTACACTTTTCCTCCTGGACCAGggtgtttaaaactttttaatttagtctgTCACTTGATGACGACAGCCTGATCCGGACCGTTAAGAGTTtaacagctgtgtgtctgtgtacattaAATCATGGTCCTCTCCTTACACTTGTCCTCCTGGACCAGGGTGAGCAACTGTTAccagtttttctttcttttttttgcccccTAGTTTTCACACTGTTTTCAATGCTGTACCTgtattagggttaggggttactTTAGACATGTATCATCATTTTTCAGTGTTTCAAGACGTTTTTGTCTCATTCACAGATGCAAGACGTTTGCTAAAAATGCACCACATTGTATTTAATGTACAGAAGTTTGCTACGGTGCCATGGTGGAGGTCTTAGACACCTGAGTGaaaatggctgtttgttaagctAATGTCCGCTTGTTAGCTTATATGGCTAACTACAAGGATGTGTAATGACAGCTCAGTCCACAATGAGCTGTGCAGATAATTATTGGGCCTATATCAAACTTTATATTAGTAACAGTAAATACCCGACATAGAGATACCCACGACACAAAGTGGAGGAGGGTAAATAGCCTCTGCAGATCCTATGTTATTTTTCATAACCGAACTGGTCAGAGTAGAGTGTTCTGCTTATTTccagttgctggtgattatcATAAAGCAGTATTACATATTCATATTTTGGATCAACACCCTTGATGAATTGAATATTTTTGTTGACACTAATTCAAAAAACAACCTTGGAAGAAATGTTGATATGACAGACTCAACTAACAGTCACAGGCTTCCTGTTTGCACATCTGATTAGCAGcttatgtagctagctagccacaaACTGGCTAACGTAGGTTTATCAGTGTTAGCAGTGGCTACAAGTGTCATGCTAGTATTAACAGATATAACATATTTTTGTATAATTCTTGCCACACGATAAACATGTTGTTATACAGACTAGCCTACTAACTAGGTTGTTGCCGTTGAGTTGTTGCTTTCTGTGCCAATATTTGAAGCGTTCTCGTTTCCCCTTTCTATCCGACTTTTGATACCAAAACAACAAGTTAAGCTAACGCAACCTACCCTGCAGTGCTTTTCTTTGTCCATTCTTACAGGACTGACTGCCATATGATTTATTAGAAATAGCATTCTTTGgatatttttacattacattaataaCATTGGATATTTTGCTTAGTATATAGGCTACCTTTCTGTTTCCTAGCCCCACACTTAGAGACACACTAAGCTATCAGCTATCACTCTGTTAGCAGGCAGTTTGGTTATACTTTTCTGTTGCACAGCTAACTCTCCATTAGATCTCCATGATGGTGCCAGACAGACTTGCAGATAGTATACCATTCATATTGTAGGACGATTTATGGGTACAGCATGGCACAGGTGAAGTAGAGAAAAAAAGCCTCCATATCTATCCATCATTAATAGACTGTCCTAGACCAGGATAGACTTGCTTGTTCCAAACTGATCTACTGCCTTGGCTTTTTCAAGCGTTATTCCACTGTGATGGAACATACTTTAATCTCTGTGGGAGTTTGAGATAAGTCAGCTAAAAATATCAGCTGCTCTGGGGACGCAAAGTCACCGTAAGAAAGATAGTGGCTATTTTACGGATGGAACAAACATGGCATGTAAGTCAGTATAATATATGCAGTAATAAAAAGTGAAATGACCTTATGAGTGGAGAGGATAATTTAATCGAATCAGCATCATTATCATGAGAATAGACCTTTtctgaaaatggaaaaaatggCAAATGTCAGTTGTGGTGAGTCAGCTTTTCAGGGGAGCTGATTTTTCATGTTGACCTCTCATCTCTTTATAAAATCAGACAAAGTGAAATATCGCTTTAAGGCCCCATACATGACCAATGTTGTTAGAATTTAAAGTGACcaattatttatattaaaataaatggaaaacatatta

Function

GO: NA

KEGG:

id description
K07886 RAB27B; Ras-related protein Rab-27B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234851 lncRNA downstream 25978 7161724 ~ 7162217 (-) True G173467
TU234793 lncRNA downstream 689048 6498867 ~ 6499147 (-) True G173418
TU234785 lncRNA downstream 692296 6455597 ~ 6495899 (-) True G173410
TU234726 lncRNA downstream 813706 6374205 ~ 6374489 (-) False LOC120544971
TU234727 lncRNA downstream 816458 6371031 ~ 6371737 (-) True G173361
TU234924 lncRNA upstream 19063 7294030 ~ 7294426 (-) True G173526
TU234957 lncRNA upstream 102160 7377127 ~ 7378374 (-) True G173550
TU234961 lncRNA upstream 201574 7476541 ~ 7477005 (-) True G173554
TU234969 lncRNA upstream 212630 7487597 ~ 7487905 (-) True G173561
TU234972 lncRNA upstream 261398 7536365 ~ 7536616 (-) True G173564
XM_039778878.1 mRNA downstream 813712 6368307 ~ 6374483 (-) True LOC120544971
XM_039780192.1 mRNA downstream 826092 6353213 ~ 6362103 (-) True txnl1
XM_039779250.1 mRNA downstream 840545 6328407 ~ 6347650 (-) True nars1
XM_039779251.1 mRNA downstream 840545 6329215 ~ 6347650 (-) False nars1
XM_039779249.1 mRNA downstream 866042 6297741 ~ 6322153 (-) True fech
XM_039778912.1 mRNA upstream 20542 7295509 ~ 7297921 (-) True LOC120544992
XM_039780067.1 mRNA upstream 49575 7324542 ~ 7361945 (-) False LOC120545581
XM_039780065.1 mRNA upstream 49575 7324542 ~ 7361945 (-) True LOC120545581
XM_039780066.1 mRNA upstream 49575 7324542 ~ 7361789 (-) False LOC120545581
XM_039780068.1 mRNA upstream 49575 7324542 ~ 7360399 (-) False LOC120545581
TU234856 other downstream 28108 7152870 ~ 7160087 (-) True G173470
XR_005636815.1 other downstream 367329 6820812 ~ 6820866 (-) True LOC120546140
XR_005636634.1 other downstream 1787517 5396633 ~ 5400678 (-) True LOC120545230
XR_005636624.1 other downstream 2290838 4849948 ~ 4897357 (-) False odf2a
XR_005636625.1 other downstream 2290838 4849948 ~ 4897357 (-) False odf2a
TU235162 other upstream 1082756 8357723 ~ 8358027 (-) True G173727
TU235313 other upstream 1350515 8625482 ~ 8633899 (-) False LOC120545754
TU235399 other upstream 1795195 9070162 ~ 9071208 (-) True G173900
TU235701 other upstream 2567845 9842812 ~ 9843499 (-) True G174120
TU235686 other upstream 2586034 9861001 ~ 9874345 (-) False grin1a

Expression Profile