RNA id: XM_039780406.1


Basic Information

Item Value
RNA id XM_039780406.1
length 4774
RNA type mRNA
GC content 0.53
exon number 31
gene id mamdc4
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 9799084 ~ 9831228 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAAACTGCTGATGAATGTTGTGGCCTTTTTGTGGTAGATAAGACTTAATGAACTTGATGGCCTTCCAAGATTACCAATGTTCTGAAAACTAGATGCAAGGCATTTTACTTCAAGTCCTCTTGTGAGAAGAAGTCAGCAAACTCACATTGGGCTAAATGAAGAGACGGAGAACAGGTCAGAGTCAACGAGCAGAGACTCCAGACTGTGTTCAGACCTCCAGACTGATCAGgtggaagagagaggaaaaaaaaaaaaaaagacaagatgtTGCAGCGGAGGAGCTCTGCCCTCGTtctgctgttgtctctgcaGTTTGCGGCTGGCTCCTGGGCTCATCCATGTGAGGCTCCGGAGGGGAaatgtgactttgtgtgtgacTGTTCTGACTGCAGCGATGAGCAAAACTGtgGCTACAGCGGGAAAGGCTTTGAGTGTGACTTTGAGGAAGCAGGAATGTGTGGATGGACGGACCAGTCCTTGAATGCAGCAGTGTACAGCTGGGAGAGACGTCAGAGAGGAGGGGAAACCACTCTGCCCGACAGCGGGCCGTCCTCTGACTACACCACCGGGACAGCTACAGGTTGGTTTATGGGAGTGAGTTCCGTGACGACCAAGTCTCTCAGCTCTGCAGTTTTAACGTCCCCAGAGATGAAACCGTCCTCCCCAACCTGTCGCCTTCGTCTCCGATACTTCCTGTGGGACTCAGGTCACACAGGTCTGGGCTCCACACCCTTGTGGGCGTCCATCCTTGGCCAGGACTCTCGCGAGGCCGTAGTGTGGCGTCCTGAGGCCACCAGTGTCCGTGGCTGGAGGGAGGCTTCCATCTTTCTGGGCCGCATTCCCACAACCTTCCAAATCCGCCTTCACTCGCAGCGCTCTGAGGGGCGAAGAGGAGACGTGGCGGTGGACCAGCTGGAGTTTCTGGACTGTGCTCTGCCCTTGCCACTCCCAGGTGAAGGGTGTCCAGCAGGGATGATGAAGTGTAGACGGGGGAGCTGCGTGGGGCTGCAGCAGGTCTGTGACGGCAGCGACGACTGCGGCGACGGGACTGATGAGGAGAACTGTGGAAGTTACCGGCGCTGTGACTTTGAGGCGGACCTGTGTGATTGGAACCGTTTACCGTCCAGTCTGAAATGGGTAAGGACCAATCAGGAGAAGATCTCGGTCACCGATCCTCTGAAAGGACCAGGCAGGGATCATTCCAACAACAGTGTAACAGGTCACTTCCTTTACGTCACTGTCCCTGATGGTGGTCTCAAAATGGACTGGGCTGCTTTCTACAGTCCCTGCCTTGAACCCACCAATAGTTCACATCCTTGCAAGATGGTGATGTACACGCACCAGTTTGGGCCGAGGTCCGGCGGTCTGACGGTGCTGGTGGCAGACACTGAGATCTACCCGGTGTGGGAGAGGGGCGGCGCTCTGGGCGATGTTTGGGTGAAGGCAGAGGTGGAGATCGTCACCAACTCCACTTTCCAAATTTTAATAATGGCAGCAGTCAGGGACTTTGCATATGGAGGTATCGCTGTCGATAGCATTGTGTTGTCTCCTGAATGCCGCTTGTCATCTGTCAATAACACCTGGGCAAAAATCCCTAAACCTCCTAAACACCCGTGTACCGTACCGGACAAGATGTGTGATTTTCACGGTGACTGTGCAGAAGCCGAGGATGAAGCCAAATGTGGGGACTTCTCTTACTCTGAGGGCAGCTCAGGCTGGACTGACTCCAGCATTGGGAGTCAAGGTTGGGTGCTCCATGAAAATTCCACATCCAAAGAGGAGTACCTGTATGTGGCCGATGCCCCAGGCCAGCAGCTGACCGAGGCCCAGACACGCACCCCCCTCCTGGGCCCCTCCGGCCCAGTATGCACCCTGAGCTTTGATTTTGCGTTAACTGGGAATCCAGATCACATTGGTGAGCTGTCCGTCAGGGTGATTGACAGCCTGCTGGGCATGCAGCCAAAGCTGTGGGAGTTCAGTGGGAAAACAGGAACCGGGGAGGGAGAGTGGAAACACGTCAACGTGTCTATTGGAGTCAGAAAACATCGATTccagCTGGCGTTTGAAGCTCGTGCTGTGAAACTTTGTCCATGCGCCAAGATTAAAGTGAAAAACGTTCACTTTGTCAGCTGTCACGCTAACTACCACCCATCTTCTCCAACAGGACTGTCCTGTAACTTTGAGGGTGGACTGTGTGGATGGTATCAGGACAACAGTGACAACTTTGACTGGGCGGCGATCGATGGGATGGACCACACCATCGGGATCGGCAGAAGTCTCGTGGTAGACATGTGGAGTCCTTCTCTGCGCGGTGCGTTCGGACGCTTAGTTTCGTACACACAGTTACCAATTTCTACAGATCACTGCCTGTCCTTCTTCTACAAACTCTACGGGCCGAACACAGGTGCTCTGAATGTCAAGCTGTTGGATAACACCGGTTATGAGACCGTCCTCTGGACCCGCAGCGCAGCTCATGGCAACACGTGGCACGAGGCCCACTGCCCCGTACCACACCAGCTCACAAACTTCCGGCTGATGTTTGAAGCGGTTCGCTCTGGTTTTGACGGACGGGTCGCCATTGACGATGTGACGTTCGTGGACCGCCCGTGCACCGTGCCGAGGATGTGTTCCTTTGAAGGCCAGCGGTGTGGGTACAGCACCTCTGGTAACGTTCACTGGCTCCACCGCAGCGGACGCACCTCCGCCATGACTGGACCCAAGACTGACCACACTCTGGAGACTGAACTGGGTTTCTACATGGTGGTTAACACCGGGGCGGACATCCTTCCCTCTGGTGGTGCGGCAGTCCTCGCCTCCCCTGTTCGCCAAGGAACCGCCAAGACTGAGTGTGTCCGTTTCTGGTATCACATGGGAGGAGTGAATCCTGGTTCTCTGACATTGTATATGAAGCCGTCGAAGGGAGAAAGGGTGAAGATCTTCTCTGACAGTCTGAACCAGGGAGATGTCTGGCGCCATGGCAACGGCAACATCTCGAGTGCCCTTGAGGACTGGCAGCTGGAGTTTGAGGTGGTCGGAGTCGGAGGCAAAGACACTCACATCGCAGTCGACGACATCTTTATTTCAGCTCACCCATGTGAAGATCAAGGGTCTAAGTGCAGCCTTGAGAAAGGTATGTGTAGCTGGAGCAACACTCAAAACATCAAGGTGGACATACTGGACTGGGAGCTGACGAGTCCTGAAGCAGAGAGACACTACTCCATCCCTCCTGAAGACCACAGTCTGGGCACAGAGAAAGGTCACTTCCTGTTCCTTCCAAGCAGCAACCGGACGGCAGCCTATCAAAACGCTCAGTTGCAGAGCCCTCACCTGCCCCCGACCAAGGGCACCTGCCTGAAATTCTGGCTCTACAAGCCATTCTCATCGGACGGCCAGCTGAAGGTGTGGAGGCTGTCTGAAGGTAGACTCCATCAGCTGCTGGTGGTAAGTGAACTGGGAGGGCCGTGGAGACGCTTTGACGTCAACATCGCATCTACTGAGGAATACCAGATTGTGTTTGAAGGAATCAAAGGCACATCAGGCGTCGTAGCTCTGGATGACATTGAGTACACCGTCGGAGTCAACTGTGCTAACGAAGTCACAGATGCACTGCCGAAGAAGCGAGACAACACGGGAGGGATCGCAGCGTCCGTCATCGTGGTCCTTCTGCTGATCGGCACATTGATCGCCCTGCTGGTTTTCTACCTGCGGACCCAACAGAGAGTCAAGGCTTCGACCGGtccatcttcatcatcatcttcctCAGCTCGTGGTGGTTTCAgtaatgaaatatatgaatcAGACCTCACACAGGACCGTGTGATGGTTGTACCAGCGCAAAACCATCCGATGGCAGCTGGGTTCAATAACGTCTCTGTCTCTGCGCACGTCAGAGAGGTGGAGGTGGTGTGAGGCGGGAGGAGTGGTGGTCCTGTCACCTAAAGGTGGCTTTGTGAAAACAAGGTGATATCACAGCAGAAGAACTGCTTGTGTCACCCTTAcatgacacacacgcacacacacacacacacgcacgcacgcacgcacgcacgcacacacacacactcacatacactcacatacacaaaacacatgcacagcCCACATACTGAAACACTGATAAAGGCCTAATCGACGCAGCTCCCCCCGATCACGGCTCTTTGCCTGGATGGAAACATGGAAGTCTGAAGGTGAACGTCTAAGGTGTCGTGAAACGGAAATTAGTTTAACTTTCTTTAAATCGAGGCTGGCCATCACCCATGAATGGCAAAAATGGTTGCATGGAGATTTAGGATCCATTTTGGGTCTGTAAGGAAGCATGAGCTGGGGGCACGGCGCTAAAAAGACGCGAGTTTACCAGGCAAGGAGGGTCTAATGAAAGACACTATGAAGTTGCATTTTGGGAGTAGAGCTTGACTCACATTAAGGACTCAAAGTTTGTTTACTGTAATATCTCTGCCTTAATCCGTCTCTCACAAGCCCACCCCCCCCCAACTTATGGAAAATTGTGGAGCCCGTTtaaagagaaaggagaaagaaaatagGAGACTggagaaagaaaataagaagactggagaaagaaaaggacTTTAAACTGACGGGTTAAACCTTGAAAAGAGGGTATAGAGAAAGTTGACATGTAATGCTGCCGTTTGGAAAAAGTCTGTAGGACGGATGTATTCTTCAGGATGTCTTGGGTTAACTTTACTCCACTCTGAAACAAGATATAATTGAGTTCTGAtgataaacaaattaaagttaagCATTGAAAAAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235693 lncRNA downstream 2113 9795843 ~ 9796971 (-) True G174116
TU235695 lncRNA downstream 2113 9795843 ~ 9796971 (-) False G174116
XR_005636702.1 lncRNA downstream 460666 9337767 ~ 9338418 (-) True LOC120545476
TU235467 lncRNA downstream 500606 9297725 ~ 9298478 (-) True G173944
TU235466 lncRNA downstream 501470 9296393 ~ 9297614 (-) True G173943
TU235681 lncRNA upstream 29791 9861001 ~ 9903007 (-) False grin1a
TU235726 lncRNA upstream 213422 10044632 ~ 10045354 (-) True G174139
TU235734 lncRNA upstream 257072 10088282 ~ 10088523 (-) True G174143
TU235759 lncRNA upstream 363866 10195076 ~ 10283957 (-) True G174166
TU235763 lncRNA upstream 405535 10236745 ~ 10239274 (-) True G174168
XM_039778813.1 mRNA downstream 6744 9782197 ~ 9792340 (-) True LOC120544929
XM_039780201.1 mRNA downstream 20904 9734455 ~ 9778180 (-) True arrdc1b
XM_039780587.1 mRNA downstream 66091 9721694 ~ 9732993 (-) True slc31a2
XM_039780585.1 mRNA downstream 133245 9622425 ~ 9665839 (-) False stxbp1a
XM_039780421.1 mRNA upstream 90 9831300 ~ 9834777 (-) True phpt1
XM_039780420.1 mRNA upstream 4603 9835813 ~ 9857844 (-) True LOC120545811
XM_039780419.1 mRNA upstream 29792 9861002 ~ 9902472 (-) True grin1a
XM_039780412.1 mRNA upstream 29792 9861002 ~ 9902471 (-) False grin1a
XM_039780410.1 mRNA upstream 29792 9861002 ~ 9902471 (-) False grin1a
TU235399 other downstream 727876 9070162 ~ 9071208 (-) True G173900
TU235313 other downstream 1165185 8625482 ~ 8633899 (-) False LOC120545754
TU235162 other downstream 1441057 8357723 ~ 8358027 (-) True G173727
TU234856 other downstream 2638997 7152870 ~ 7160087 (-) True G173470
XR_005636815.1 other downstream 2978218 6820812 ~ 6820866 (-) True LOC120546140
TU235701 other upstream 11602 9842812 ~ 9843499 (-) True G174120
TU235686 other upstream 29791 9861001 ~ 9874345 (-) False grin1a
TU235744 other upstream 266166 10097376 ~ 10108283 (-) False gtf3c4
TU235941 other upstream 1330030 11161240 ~ 11164355 (-) False LOC120545042
TU236123 other upstream 2525718 12356928 ~ 12357890 (-) True G174439

Expression Profile