RNA id: XM_039780443.1


Basic Information

Item Value
RNA id XM_039780443.1
length 318
RNA type mRNA
GC content 0.57
exon number 3
gene id LOC120545827
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 458084 ~ 459276 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGTGAGTGTGCCCTCTGGCCGCCATTCATCTGTCTCAAACAGAGGCTCCTGctcctcctttttctctgaGGGGAAGAACAGTATGATTACCACGGCGATAAGAGGCAGAGTAACGTCGCAGTGTCAGAAGCTGTCTAGCAGCTCAGTGCAGCGGGCCCCCAGCGGAGCCCCAGGGGCCACAGAAGAATGTGGCGTGGAGAAAGTGATGGGTGATGATGCACCTAACACCGCGCACACCAAGAGCAGGACGGTGAGCGCCATGGATGTGGTAAATACTCTGAAGAGGCCGGGCCGCGCCCTGTACAGCTTCAGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232649 lncRNA downstream 162799 295066 ~ 295285 (-) True G171636
TU232606 lncRNA downstream 386286 71037 ~ 71798 (-) False LOC120546083
XR_005636784.1 lncRNA downstream 386293 71010 ~ 71791 (-) True LOC120546083
TU232694 lncRNA upstream 20518 479794 ~ 480151 (-) True G171674
TU232700 lncRNA upstream 59564 518840 ~ 519070 (-) True G171680
TU232744 lncRNA upstream 107743 567019 ~ 567342 (-) True G171718
TU232745 lncRNA upstream 111025 570301 ~ 570904 (-) True G171719
TU232754 lncRNA upstream 140270 599546 ~ 600048 (-) True G171728
XM_039780464.1 mRNA downstream 115707 302496 ~ 342377 (-) False mapkap1
XM_039780465.1 mRNA downstream 115707 302496 ~ 342377 (-) True mapkap1
XM_039780466.1 mRNA downstream 115708 302496 ~ 342376 (-) False mapkap1
XM_039780852.1 mRNA downstream 273301 144208 ~ 184783 (-) False LOC120546082
XM_039780834.1 mRNA upstream 74103 533379 ~ 564782 (-) False nek6
XM_039780833.1 mRNA upstream 74103 533379 ~ 564782 (-) True nek6
XM_039779351.1 mRNA upstream 136617 595893 ~ 621737 (-) False LOC120545215
XM_039779353.1 mRNA upstream 136617 595893 ~ 605140 (-) True LOC120545215
XM_039780127.1 mRNA upstream 165684 624960 ~ 659720 (-) True crb2a
TU232928 other upstream 710927 1170203 ~ 1170789 (-) True G171868
TU233144 other upstream 1137240 1596516 ~ 1602156 (-) True G172032
TU233470 other upstream 2525546 2984822 ~ 2985260 (-) True G172311
TU233826 other upstream 3427312 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 3682577 4141853 ~ 4147755 (-) False cdk9