RNA id: XM_039780465.1


Basic Information

Item Value
RNA id XM_039780465.1
length 2526
RNA type mRNA
GC content 0.51
exon number 13
gene id mapkap1
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 302496 ~ 342377 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCATGAAtaagacaagaagaagaaatttGCTAAGACAgctcctcagcagcagcagcttacATTGGGTACCAGTTGTGTTATGATTTTGCTACTGTGCAGTTTTACTAATGGGAAGCGTTGCTGTCAATACTGGGATTAAGCATGGATAAAGCGGGCAATGTGGACATTTCTTTCCCTTATCGGATGTGACTTCTAAAGGTGGGACGCCGTCATGAAGCAACGTTAACAGAGATAGCAGCTGtgatagcagctaacgttaaccaaAGAAAGCTCCAGAGATATTAGCCTTCACAAACTGAGAGCCAACTAACGGTACGGGTGGCGTTCCTGCCTTCGAGCAGAAATATTAATCAAGAGAAGGAGATGGAAAAGATGGCTGTTCTCCACTTGTCATCAGCCACTCGTTTAATACTCTCCGAGAGAGACTGAAAGGAAGAGAACAGATCCTCTGGCAGGAGGGTGAGACACAGAGAAAACCTCCACAGCTATCAGCCCCTTTATATAACGGAGGAAATGGCTTTCTTGGACAACCCAGCCATTATTCTGGCCCACATCCGACAGTCTCATGTGACCAGTGATGATACAGGGATGTGTGAGATGGTACTAATAGACCAGgatgtggatctggagaagtgCCAGCTGGCTCTGGTGCCTGGCAGCAGCTGTGGGTCAATGGGGTCCACCTCCCTGAGTGAGGGGGACAGCAGCGTGACAGACAACCACGCCTGTGACCTCTCCCAGTCCATGGACATTACCTCCAGCTGGGACTTTGGCATCCGTCGGCGCTCCAACACAGcccAAAGACTTGAAAGGTTAAGGAAAGAACGACAGAACCAAATCAAATGTAAAAACGTTCAATGGAAAGAGAGGTCATCCTCCCAATCAGCGGAGGATCTGGGGTCCCTGTTTGAAAAACGGGACTTTAAAGACAGGCCGCGGACAACCGGTAGCAAATCCACACTGTCCCTGCGGCTGGAGCAGTGTCCCCAGCAGCTCAACAACCCCTTCAATGAATACTCCAAATTTGATGGCAAGGGCCACATTGGCACAACAGCTACAAAAAAGATTGACGTCTACCTCTCGATGCAGATGGCTCAGGAGAAACTCCATCCCATGACAGTGGTGACCATTGCCAACGCCCGTGTGCACGACCTCATCGGCCTCATCTGTTGGCAGTACACAAGCGAGGGGCGAGAACCCAAACTCAATGAGAATGTCAACGCTTACTGCCTCCACATCGCTGAGGATGACGGCGAGGTGGACACGGACTTCCCTCCGCTGGACTCCAACGAGCCAATCCACAAGTTCGGTTTCAGCACTCTGGCCTTGGTGGAGAAATACTCCTCCCCTGGCCTCGCCTCCAGACAGTCGCTGTTTGTCAGAATAAATGCTGCTCGTGGTTTCTCTTTAATCCCTGTGGACAGTCTGAAGGTAACCATGAAGGAAATTCTCCAGAAAGCACTCAAGAAGAGGAAAGGCTCACAGAAAGGCTCAGGGCCCATGTATCGCCTGGAGAAGCAGACGGAGCCAAACGTGGCGGTAGACCTGGACTCGACCCTGGAGAGCCAGAGCACCCTGGAGTTTTGTCTGGTCCGAGAAAACACTCAGGAAAACTTGGGCTCCCGGGGCGAGGAGAGCTCTGAGGAAGACCCACCCATTGACATCACCTCAGTCCAAGACATGCTGAGCAGTCACCACTATAAGTCCTTCAAGATCAGTATGATCCACAAGCTGCGCTTCACCACGGATGTCCAGCTAGGTATTTCAGGAGAGAAAGTGGAGATCGATCCTGTCACCAATCAGAAGGCCAGCACCAAGTTCTGGATCCGGCAGAAACCCATCTCTATCGACTCGGACCACCTGTGTGCCTGTGACCTGGTGGAGGAGCGCAGCCCCAATCATGCAATATTCAAGCTCACTTATCTCAGCAACCATGACTACAAGCCGCTCTACTTTGAGTCGGATGCTGCTACGGTCAATGAAATAGTGCTGAAGGTGAACTACATCCTGGAGTCCCGGGCCAGCACCGCTCGGGCCGATTACTTTGCCCTGAAGCAGCGGAAACTGAGCCGGCGCACCAGCTTCAGCTTccagaaggagaagaagacgGGCCAGTAGGCTCAGCCGGTCTCCTGTACACACAGCGGGActggagacagacaggaagactgTGTGTCTCGGCTCCAGCTGGCCGAGGGGGGCGCCTCTGAAACCCCATGGGCCAGGACAGTCCGCCAGCAAAAACAAACCAGTGATTagttttctaaaaaaggaaaaaggctTTGAAGAGCTGTGGGACCGAGAGTTGTCAGCTGCTGTTTTATTCCCTGCCTCGCTGACTGAACACCCGCTCCGTCCTCCAGGGGGGGTTGGTTTGAAAGCTACATGCTAAATCGTTGCTTCTGTCCCGCCATCTTTATCACATGTAACATAGCAACAGGACAAGCAAACCTTCACATTTTTATGTTCTGTACAAAGACATTTTACATTCAGGAAATGAAATAATGATGATATAGAAATGAAAAA

Function

GO: NA

KEGG:

id description
K20410 MAPKAP1, SIN1; target of rapamycin complex 2 subunit MAPKAP1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232649 lncRNA downstream 7211 295066 ~ 295285 (-) True G171636
TU232606 lncRNA downstream 230698 71037 ~ 71798 (-) False LOC120546083
XR_005636784.1 lncRNA downstream 230705 71010 ~ 71791 (-) True LOC120546083
TU232694 lncRNA upstream 137417 479794 ~ 480151 (-) True G171674
TU232700 lncRNA upstream 176463 518840 ~ 519070 (-) True G171680
TU232744 lncRNA upstream 224642 567019 ~ 567342 (-) True G171718
TU232745 lncRNA upstream 227924 570301 ~ 570904 (-) True G171719
TU232754 lncRNA upstream 257169 599546 ~ 600048 (-) True G171728
XM_039780852.1 mRNA downstream 117713 144208 ~ 184783 (-) False LOC120546082
XM_039780443.1 mRNA upstream 115707 458084 ~ 459276 (-) True LOC120545827
XM_039780834.1 mRNA upstream 191002 533379 ~ 564782 (-) False nek6
XM_039780833.1 mRNA upstream 191002 533379 ~ 564782 (-) True nek6
XM_039779351.1 mRNA upstream 253516 595893 ~ 621737 (-) False LOC120545215
XM_039779353.1 mRNA upstream 253516 595893 ~ 605140 (-) True LOC120545215
TU232928 other upstream 827826 1170203 ~ 1170789 (-) True G171868
TU233144 other upstream 1254139 1596516 ~ 1602156 (-) True G172032
TU233470 other upstream 2642445 2984822 ~ 2985260 (-) True G172311
TU233826 other upstream 3544211 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 3799476 4141853 ~ 4147755 (-) False cdk9

Expression Profile