RNA id: XM_039780470.1


Basic Information

Item Value
RNA id XM_039780470.1
length 1555
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC120545849
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 8060447 ~ 8073342 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCTGGCAGTGAAATATCGCTTGTACAACAGAAGCTTGTAACTGTGCCACTAGCAGCATCAATAAAGGCTGACCGCCTCTCTGACGCTCAGTCATCGTTACTTTCGTGACAGCTATCATCTGTGCTTGgtggtggttgttgtttttttgaagCTGATCAGCAGTAGCGTCATGAATCTGTGGCTCAGCAGTTATTTTCTGGTAGCGGGGCTGTTTCTGAGCAGCTCGGCCCTGACACCTGAAGAATGCCAACCCTTGGTCAAGCCTTTGCTTCTGACTGAACCCTCAGTGATATATGGCTGGTGGACCACTGTTGCGGGTTACGTTGATGGTGAAGGATTTGATGCCCTTCAGAAGGCAACAGAGAGCACCTGGATGAATGTCACTCAATCACCATCCAGCCCAAATGTAGTTGTTTTATCTGAGAAGAACAAGATAAATGGAACCTGTGTGGACATAGCTTTGAATTTAACTATTGATGGCAACACTGCATCAGGGTCAGTGGGCGACATGGTCTTTTCGGAATTCCAATTTCTGCCGAGCTGTGACAGCTGTTTCATCTTGAGCGTCAACACCACCGCCAGAAACCTCGACAAGTTATTACAGCAATTAAACATCAACATGGACGTTACAGGGGAGGAGGTCAACATTCGTGCCATTTATTTGATAGGCAGAGAGTCCACCGTGAAGGACTCTGAACTGGAACATTTCAAGCAGCAGGCGAGCTGCCTCGGCTTCTCCAGAGAACCAGACTTCATCTACGACCCCAAGAACGGACGCTCAGTCATCGTTACTTTCGTGACAGCTATCATCTGTGCTTGGGTGATTTTTTTCAGTTATATTTTGAAGATGATCAGCTGTAGCATCATGAATCTGTGGCTCAGCAGTTATTTTCTGGTAGCGGGGCTGTTTCTGAGCAGCTTGGCCCTGACGCCTGAAGAATGCCAACCCTTGGTCAAGCCTTTGCTTCTGATTGAACCCTCAATGATGTATGGCAGGTGGAGCACTCTTGCAGGTTACGTTGACGGTGATGGATTTAATGCTCTTCTGAAGGCAACAGAGAGTGTCTGGGTGAATGTCACTCAATCACCATCCAGCCCAAATGTAGTTGTTTTATCTGAGAAGGACAAGATAAATGGAACCTGTGTGGACCTAGCTGTCAATGTAACCATTGATGGCAACACTGCATCAGGGTCAGTGGGTGACATGGTCTTTTCGGAATTCCATTTGCTGCCGAGCTGTGACGGCTGTTTCATCTTGAGCGTCAACACCACCATCAAAAACCTCACCATGTTATTACAGCAATTAAACTTCAACATGGACGTTACAGGGGAAGAGGTCAACGTTCGTGCCATTTATTTGATAGGCAGAGAGTTCACCTTGAAGGACTCTGAACTGGAACATTTCAAGCAGCAGGCGAGCTGCCTCGGCTTCTCCAGAGAACCAGACTTCATCTACGACCCCAAGAACGgatTCTGTGCTTAAGGCGAGGTCATGAAGTTTCGACCAACTTTTATATAGGCTAACTGACGAAGTCAAGAGACAAAAAGTGACT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG:

id description
ko00350 Tyrosine metabolism
ko00130 Ubiquinone and other terpenoid-quinone biosynthesis
ko04610 Complement and coagulation cascades
ko05133 Pertussis
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235095 lncRNA downstream 116198 7941588 ~ 7944249 (-) True G173673
TU235083 lncRNA downstream 148146 7909371 ~ 7912301 (-) True G173661
TU235059 lncRNA downstream 235168 7824687 ~ 7825279 (-) True G173638
TU234983 lncRNA downstream 431694 7628541 ~ 7628753 (-) True G173573
TU234972 lncRNA downstream 523831 7536365 ~ 7536616 (-) True G173564
TU235119 lncRNA upstream 14825 8088167 ~ 8088441 (-) True G173689
TU235135 lncRNA upstream 157317 8230659 ~ 8230858 (-) True G173704
TU235145 lncRNA upstream 208343 8281685 ~ 8289130 (-) True G173713
TU235184 lncRNA upstream 359660 8433002 ~ 8438975 (-) True G173744
TU235209 lncRNA upstream 382422 8455764 ~ 8468380 (-) True G173761
XM_039778728.1 mRNA downstream 111843 7946862 ~ 7948604 (-) True gadd45gb.1
XM_039780129.1 mRNA downstream 193839 7847724 ~ 7866608 (-) True c7b
XM_039778913.1 mRNA downstream 277971 7780288 ~ 7782476 (-) True htr1ab
XM_039780862.1 mRNA downstream 380295 7664258 ~ 7680152 (-) False parm1
XM_039780861.1 mRNA downstream 380295 7664258 ~ 7680152 (-) True parm1
XM_039780614.1 mRNA upstream 25517 8098859 ~ 8202622 (-) True LOC120545930
XM_039780082.1 mRNA upstream 310173 8383515 ~ 8388610 (-) True LOC120545589
XM_039778956.1 mRNA upstream 417764 8491106 ~ 8530029 (-) True LOC120545024
XM_039780070.1 mRNA upstream 485428 8558770 ~ 8575540 (-) True slc30a5
XM_039780771.1 mRNA upstream 503161 8576503 ~ 8586809 (-) False LOC120546028
TU234856 other downstream 900360 7152870 ~ 7160087 (-) True G173470
XR_005636815.1 other downstream 1239581 6820812 ~ 6820866 (-) True LOC120546140
XR_005636634.1 other downstream 2659769 5396633 ~ 5400678 (-) True LOC120545230
XR_005636624.1 other downstream 3163090 4849948 ~ 4897357 (-) False odf2a
TU235162 other upstream 284381 8357723 ~ 8358027 (-) True G173727
TU235313 other upstream 552140 8625482 ~ 8633899 (-) False LOC120545754
TU235399 other upstream 996820 9070162 ~ 9071208 (-) True G173900
TU235701 other upstream 1769470 9842812 ~ 9843499 (-) True G174120
TU235686 other upstream 1787659 9861001 ~ 9874345 (-) False grin1a

Expression Profile