RNA id: TCONS_00003007


Basic Information

Item Value
RNA id TCONS_00003007
length 1126
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id XLOC_000028
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1015812 ~ 1033638 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCAGTGAAAGTGTTTGAGACTCAGTCAGCGAAAGTGAGCTGAAGAGAGATGAGCTCTCACAGGAAACATGTAGACTTCAACTCAAGATTTCACATCTgagattataaatattattattaatatcatactGCTGGACTTCAGATGGTATCCGGGATGCTTTTCGCATGTGCAGTCGGACCTGCTGGTTTCAGGGGCTTTTCAGTCGCGTTCCTGCTGTTATTGGCGATGGCTGGCTGTGATTTTACTGCGGTAAATGTAAAAGCCAGAGCAGGTGAAGCGGCTGAGTTACCCTGCACGTGTCCTGCTGATCAGGATCCGTTGCTGGTCTGGCAGAAGGACGTGAATGGAACGCAGCTCGTGGTTAATTACGACAAATCAAACAACAACGAGGATATTGCAGCAGATTTCCAAAACCGAACGGAGCTGAAGCGCAGCGGAGACGCTTGTTTTCTAATGTTTTACAGCGTTCGTCAGTCAGATGAGGGATGGTACAAGTGTTACTACATGAAATCCCCTTTAAAGCATAATAACATCTATCTGGAGGTcacagATCCAAGTCCTATTAAAGGCCCTGGGGACGTCCAGAGCACCGCAGTGATGTCTTCAGCCTGTGTGCTTCTCATCATCTTGATCGCCGTTGCAATTTTTCTGGGAATTATCTGCAGAAAGAGGCATTGCATGAAGAGAACGTCAGTTGCAACATCGACGAGGAGCATTTAGCAGATGTCAATAACTGATGTCAAATAAATCTACATCTGTGAGAGTCTGTCTGTGTGACTGAAACAACAAACTCAACCGAATGCACATGATAAAACACGCCGGGCATTTTTGATGTGGGGTGACCTATTTATTTTGCTCATCCGTCATAATCAGTCACttaatttgaatgtttatatGTACATGAGACATTTATAGACACATATAGACTTGATATATGTTAAAGCAATACTAAGATGCGCACTGAACATGTTCACtaatgtttacatatttacagttttacaaatCGTCGCCCTGCTAATGCAGATATGTGctcattattttttataacagtgttttatattgttttatatgtctggaaatgtgtgttttttatcttttatataaaaaatatatttttattaggac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003006 lncRNA upstream 104261 794976 ~ 911551 (+) True XLOC_000026
TCONS_00003005 lncRNA upstream 117632 794976 ~ 898180 (+) False XLOC_000026
TCONS_00000055 lncRNA upstream 429311 580688 ~ 586501 (+) True XLOC_000023
TCONS_00003003 lncRNA upstream 657250 355481 ~ 358562 (+) False XLOC_000018
TCONS_00003004 lncRNA upstream 657250 355771 ~ 358562 (+) True XLOC_000018
TCONS_00003008 lncRNA downstream 281651 1315289 ~ 1321953 (+) False XLOC_000030
TCONS_00003009 lncRNA downstream 281651 1315289 ~ 1342237 (+) True XLOC_000030
TCONS_00003010 lncRNA downstream 325093 1358731 ~ 1360451 (+) False XLOC_000031
TCONS_00003011 lncRNA downstream 325259 1358897 ~ 1360831 (+) True XLOC_000031
TCONS_00002806 lncRNA downstream 538209 1571847 ~ 1576390 (+) False XLOC_000032
TCONS_00000059 mRNA upstream 44861 961607 ~ 970951 (+) True XLOC_000027
TCONS_00000058 mRNA upstream 407565 604127 ~ 608247 (+) True XLOC_000025
TCONS_00000057 mRNA upstream 407757 594736 ~ 608055 (+) False XLOC_000025
TCONS_00000056 mRNA upstream 412415 594584 ~ 603397 (+) False XLOC_000025
TCONS_00000054 mRNA upstream 424481 580642 ~ 591331 (+) False XLOC_000023
TCONS_00000062 mRNA downstream 566341 1599979 ~ 1614500 (+) True XLOC_000033
TCONS_00000063 mRNA downstream 656137 1689775 ~ 1706159 (+) False XLOC_000035
TCONS_00000066 mRNA downstream 678502 1712140 ~ 1731564 (+) False XLOC_000036
TCONS_00000072 mRNA downstream 755719 1789357 ~ 1796832 (+) False XLOC_000036
TCONS_00000074 mRNA downstream 771656 1805294 ~ 1815660 (+) True XLOC_000037
TCONS_00000053 other upstream 439291 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000052 other upstream 469595 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000047 other upstream 500490 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000036 other upstream 721918 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000003 other upstream 1002555 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000060 other downstream 185053 1218691 ~ 1218805 (+) True XLOC_000029
TCONS_00000061 other downstream 541845 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000067 other downstream 678515 1712153 ~ 1718527 (+) False XLOC_000036
TCONS_00000068 other downstream 684059 1717697 ~ 1723157 (+) False XLOC_000036
TCONS_00000069 other downstream 684973 1718611 ~ 1793371 (+) False XLOC_000036

Expression Profile

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