RNA id: XM_039780567.1


Basic Information

Item Value
RNA id XM_039780567.1
length 6322
RNA type mRNA
GC content 0.56
exon number 29
gene id dcc
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 2469175 ~ 2807464 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcGACTCGCTCCCTCCACACTCCTCCGCCTCTTCCGACCCTCTCCATCCGTTCTCCCCGGCAGACGGAGCAGACCTCCGGGAAGGAAgcgtggatttttttttaaccctcctTTGCATCTGTGTGAATGGGAATCAGCTGCACCGGGCAGGAGTGATGGAGACTCTGCCTCCATAGTTACTGGAACTTATTTCTCATCCCAAAAAAGAAGGAACTAaccgcgcgtgtgtgtgtgtcttgtttgggatttttcttttctttccttttctttctttttttgggggggagtaTCAAGCCCGATCGGGGAGGTTTATTTTGGGGGAGAGGAGAGGCTGTTttaccccccctctctctctctctctcctccttaacATCATCCTGCTGCTTCACCAACCTGAGTTTCTCTTTTAGATTTTTTAATTGACAGTTGGATTCTGTGGAGGatttaagaagaagaaaaaaaccaaacagcaGCAGGATTTGCTGTGTTTTCCCTCGGGCTCATTGGGACTGGAGCCGGGCAGCATGGAGCTGGGTTTGGTTGGATGTAGGGGTGATGTTTGGGAGGTGCTGGTgcggagaaggaggaggaggacaggggGATTctacctgctgctgctctgctggcTTCTGGCTGCTCACACCACAGCGCACGCCTCGGACACTTCCTCATCTTCTTCCTtgtcctcgtcctcctcctcgtttACTCTTGGAGGTTTCGTGGACttcactttcacccaggagccTCAGGACACAGTAACGGTGCGAGGGGGCGTGTTGCAGCTCGACTGCCAGGCGCAGTCCGATGCAGTGGCAGGACCTCCCATCATCACATGGCGTAAGGACGGCGTGCTGCTGAGTGCAGTGGTGGATGAGCGGCGACGGCAGCTGGCTAACGGCTCGTTGCAGGTGCAGAATGTCGTCCACTCGCGGCACCACCGACCTGATGAGGGCGAATACCAGTGCATCGCCACACTGGATGGACTGGGGAGCATCGTTAGCCGGACCGCCAGGGTCACTGTGGCTGGTCCGCTGAAGGTGGTCATCCCCACCGAGTCCGTTTCCTCGTACTTGGGCGACACCGCCCTGCTGCGCTGTGAGGTCTCGGGCGACCCGACGCCCGTCATCCGCTGGCAGAAAAACCGGGAGGACCTAccactgacctttgaccccgaCTCCCGCATGGCGGTGCTGCCGTCAGGATCGCTTCAGGTCAGCCGCGTCCAGCCGCCAGACTCAGCCACGTACCGCTGTCTAGCCGACAACCCCAGCAGCACCCGGACGGGGACGGACGCCGAGCTCCGAGTGCTCCCAGagccCGGGGTGAGCAGGAACCTCCAGTTCCTCCAGCGTCCCTCCAGAGTAACGGTTCTGCTGGGAACCGACGCCGTGCTGGAATGTTCCGCCTCCGGATACCCGACTCCAAGCATCcagtggaggagaggagaggaactgATCCAGAGCTGGAATAAGAAGTACTCTCTGCTGGTGGGCAGCAATCTGATCATCAGGAGTGTCACCGACGACGACTCTGGCAGTTACAGCTGTACAGCGGCCAACAAGAACCACAACATCACTGCGCACACAGAGCTGAGTGTACTAGTGCCTCCTCAGTTCCTCAACTACCCGACAAACACGTACGCCTACGAGTCCACGGACATCGAGCTGGAGTGTGCAGTGACAGGAAACCCGCCGCCGACCGTGCGCTGGATGAAGAACGGGGAGGAGGTCATCCCCAGTGACTACTTCCAGATAGTGGACGGCAGTAACCTGCAGATTTTGGGTTTGGTGAAGTCAGACGAAGGATTTTATCAGTGCGTCGCCGAAAACTCAGCCGGCAGCTCGCAGGCGATGGCTCAGCTGCTGCTCCGGGAGCCAGTGTCCCCCAGCCCGGGCGTTGCCCTCCCCTCTGCCCCCCGCGACCTGGTCCCTGTCCTAGTGTCCAGCCGATTTGTCCGACTCAGCTGGCGCCCCCCGGAGGAGACCGGAGGAGCCGTGCAGACCTATGGCATTTATTACTCCCAGGACGGAGTTGAGAGGGAGCGGTCAGTGAACGTGTCGGAGCCGGAGTCTCTGGAGCTGACCGTCTCGAACCTGAAACCAGAGGAGAGCTACAGCTTCAGAGTCATCGCTTACAACGACGTGGGGCCAGGAGAGAGCTCCGCCCCCCTGAGGATCACCACCAAACCTGAccTCCAGGTTCCCAGCAGGGTGGAGTCTGTCCAGGCTGAGGCTCTGTCTCCCACGTCGGTCCAGGTGAGCTGGGATCCCCCCAGCCAACCAAACGGCCCCATCCTGGGCTACAGACTGCTGTGGACTGAAAGCCCATCGGGCAAGGAACAGagtgtGGAGGTGAACGGACTCAACTACAAGATGGAGGGACTCAATAAGTTCACCGAGTACGCAGTTCGAGTTCTGGCGATCAACCGCTACGGACCCGGCGCCGCCGTGGACACTGTCAGCGTCACCACCCAATCAGATGTACCCAGCGCTCCTCCCAACAACATCACCCTAGAGGTTGTCCTGTCCAGGAGCATCAAGGTGTCATGGCAGCCGCCCCCGCGCAGCGCCCAGAATGGCATCATCTCCGCCTACAAAATCAAATACAGGAAGACCGGTCGCCGTGGAGACCAAGAAGCCATCGAACCCAACAATTTCTGGTACCTTTTCACAGgtcTAGAGAAGGGCAGTCAGTACAGTTTCCAAGTATCAGCCATGACAGCCAATGGAACTGGTCCGGCCAGTGACTGGTACACTGCTGAGACACCGGAGAACGACCTGGATGAGAGTCAGGTGCCTGACCAGCCCAGCTCGCTGCACGTCAGGCCGCTGCCCAACAGCATCATCATGTCCTGGACTCCGCCCCTCAGCCCAAACATCCTGGTCCGGGGTTACATCATTGGCTACGGAGTGGGAAGTCCCTATGCCGAGACGGTGCGAGTGGACAGCAAGCAGAGATACTACTCCATCGAAAACCTTGagcCGAGCTCGCACTATGTGATTTCCCTGAAGGCGTTCAATAATGCCGGCGAGGGAGTGCCGCTGTATGAGAGCGCTGTCACTCGATCTCTGACAgacccCATAGACCCATCTGAGGATGACCTCTTCCACCTCTTTGATAAATACCCCACTCCCATGCCAGACACCAGCACTCCCATGATCCCCCCGGTGGGGGTTCAAGCCGTGGCTCTGTCCTCGGACTCGGTGCGCGTCTCCTGGGCCGACAACTCCATGACCAAGAACCAGAAGGCGTCTGAAGTCCGGTACTACTCCGTCAAGTGGAAGACCAGCTACTCCACCAGTGGAAAGTACAAGTCTGCAGACACCACGGCGCTCAGCCACACTGTCACCGGCCTCAAACCAAACGCCATGTACGAGTTTGCTGTCATGGTAACCAAGGGTCGCAAGTCCAGCACCTGGAGTATGACAGCACACGCCACAACGTATGAAGCAGCTCCTAGCTCCGCCCCCAAAGATTTGACAGTGATCAGTCGCGAGGGACGACCCCGCGCCATTTTAATCAGCTGGCAGCCGCCGATGGAGGCTAACGGACGAATCACAGGTTACATCCTGTACTACACGCTGGATAAGAACATGCCGATAGATGATTGGGTGATGGAGGCGATCACCGGTGACCGGCTGACCCATCAGGTGGTGGATCTGAACCTCGACACGGTTTATTACTTCAGGATTCAAGCCAAGAACGCCAAAGGAGTCGGCCCTCTGTCTGAGCCCGTCCACTTCAGGACCGCCAAAGTGGAACATCCGGACAAGATGGCCAATGATCAAGGTCGAGGGGGCGACCATGCCTACTGGCCGTCTGACACCAACCTAATAGACAGGAGCAGCATCaacgAGTCTCCCATTGGTCAGATGCGTCCGCCCCACGGCAGCGCCACGCCTCAGAAGAATAGTAACCTGCTGGTCATCATCGTGGTTTCCGTGGGAGCCGTTACCGTGGTGGTGGTCGTCATCGTGGCGCTCATCTGCACGCGACGCTCCTCGGCCCAGCAGAGGAAGAAGCGAGCAAGCCACAGCGCCAGTAAAAGGAAGGGCAGCCAGAAGGACCTGCGCCCTCCGGACCTGTGGATCCATCACGAGGAGATGGAGATGAAGAACATGGAGAAAGCTCCCAGCATCGCCCCGTCCGCACGTGATTCGCCCACCCAGTCCTGCCAGGACCTCCCCCAGGTCGCACACAGCCAATCGGAGAGCCAGATGGGCAGCAAGAGCAGCAAGAGCAGCCACTCAGGGGCGGACGGTGACGAGGCGTCCAGCTGTATCTCCACTCTGGAGCGCTCCCTGGCTGCCAGGAGGGGGACACGGGGGAAAATGATGATTCCTATGGACTCACAGCCGAGCAACACACCGGTGGTCAGTGCCATTCCGGTGCCAGCTCTGGACTCCTCCCAGTATCCAGGGATCCTGCCTTCCCCTTCCTGCGGCTTCACTCACAACAAGTTCAGCCTGAGACCGATGCCTTTCCCAAGCCTGACCGTGGACAGAGGATACACTCCAGTGATGCCTTCAGACAGCTCCACCAATCctctcctccagcagcagccTTTGCCCCAGACGGCTCCTCCGCTGCTCCCCGGCTCCTCCGCACCGCCGGGGGAACATGTTCTGGGTGTTGGCCCAATCCCAGGAGCCCCCGCTGCTGCCGCTGCGGAGGAGTCCCAGGCCGGGAACGCTCGGACCATCCCGACGGCCTGCGTGCGGCCCACGCACCCGCTACGGAGCTTCACCAACCCACTGCTGCCTCCGCCCATGAGCACCATCGACCCAAAGGTGTACACCTCCATGCTGCCACAGTCCAGTGCGAGCCTTCCGAAGCCCCAGGTGAAGACGGCCTCTCTGGGTCAGGCCGGTAAGGCTCGCTCCCCTCTGCTGCCCGTCTCAGTCCCTACGGCGCCGGACCTACTGGAGGAGGGAGGAACAAAACCTGCAGAGGATTCAGCTGCCAACgTTTATGAGCAAGACGACCTTTCAGAGCAGATGGCCAGTCTAGAAGGCCTGATGAAGCAGCTCAACGCCATTACTGGCTCCGCCTTCTAACCCCTGACACCGGCCCAGCCCAGCCCTCAGCCTTGGTCCTGTCTGGAAACCTTCTTCAAGCCTTGATGTCACCTGCTGTCCATATGCTAAGAGCGGCAACAGGTCAATCTGAGTTTGAAGACGCCTCTTTGGAATCAGACCTACATCTGTGCTGGGTTGAGTTTGTTTGGTTTCTACTGGTCTCAGGTAGTGTCTACTATTTGGGACAGGGATAGGATAGAAGGGAATCAAACTCTTAAGAACAGGACAAGGGTGGAGGGGCTTCTTTAGGAGTTCAAACTGAAACCCCTCTAGACTCTTCAACCTCAAACACAAAACTAGAAAAACCCAATGCCTAGCGCCTCAGCTTAATGACACAGGATGATGGGATAAACACAAAAAGAAGACAAAGTTATAAGATCCCTCCTGTTTCTCTTCTTTGTGGTATTTATTAGCGTCCTCACTGAGTTAGCCACAACTCAGTTACTGTGACTGTagctcatttatttttcatgatCGCTGTTGGAAGTATTCCTTTtgtcttttggtttttgttTGGGTATTCCAGCTTTGTGCAGTTACAAGGATGTGTATATGGTTTGAAATGCCAACATAACCTAcagtaaaaaacagaaaacacatcCTCAACCACCAAAGtttcaacaaaacatttttttttctaacttgGATCGGAGGTCGCCTGTTGTGGTGACACAAGGTGATCCTCTCTGGCATTTCATGCCTACTTTTCCGAACAAAACAGCTTTCAACTTTCACTCAGAACCCATGCAACAATTTCACCTCTGGATTCTGAGGTTTCAAAAAACAAAAGGGATTAAGACTGATTTTGGCCGGTTCGAAACAAGTGTGAGAACCTACTAGACCGGTCTGAATCGCCTGGATCGGCTGACTACTCTTACAGGACTGTACAGACTCCCACAGTCTGTTGCTGCTCTTGATCAAGACTTTACTCTCCCTAACCCAGACGTACTCCAATATTTACCTACAAGGACTTGTGTTGTTGCCAAATTCTCATCTTGGAAAACTTATTGTAACCTTCTTTGTTTTTGCTCCTTGTTCAAGTCTGTCTCAGTCTCAACCATGGACTGGAAGTCAATGAAAAGCAGTAAGATGATCCGTGTGGAACACATGTTATAAGAAATCTGGATTTGGATCGGTAGGACCCATCCCATCCTGGACAAATGAAGATTGACTTGATATGGTATACGGTGATATGTTCTTTTGAGAAACGTGTTCATTCAAATTCGGTCTTAACCCCTCGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636609.1 lncRNA downstream 62307 2405775 ~ 2406868 (-) True LOC120544955
TU233388 lncRNA downstream 127144 2341626 ~ 2342031 (-) True G172235
TU233382 lncRNA downstream 139205 2329685 ~ 2329970 (-) True G172231
TU233317 lncRNA downstream 372011 2090423 ~ 2097164 (-) True G172180
TU233288 lncRNA downstream 379196 2089713 ~ 2089979 (-) True G172151
TU233445 lncRNA upstream 1510 2808974 ~ 2809467 (-) True LOC120545025
XR_005636620.1 lncRNA upstream 1609 2809073 ~ 2809530 (-) False LOC120545025
TU233454 lncRNA upstream 65392 2872856 ~ 2873112 (-) True G172295
TU233474 lncRNA upstream 179745 2987209 ~ 2987606 (-) True G172312
TU233475 lncRNA upstream 180473 2987937 ~ 2988216 (-) True G172313
XM_039780463.1 mRNA downstream 189364 2253897 ~ 2279811 (-) True dcp2
XM_039780448.1 mRNA downstream 216220 2179488 ~ 2252955 (-) True LOC120545833
XM_039780032.1 mRNA downstream 310124 2145367 ~ 2159051 (-) True hmgcs1
XM_039780033.1 mRNA downstream 310814 2148495 ~ 2158361 (-) False hmgcs1
XM_039780446.1 mRNA downstream 396069 1948903 ~ 2073106 (-) True tln1
XM_039780659.1 mRNA upstream 361162 3168626 ~ 3246890 (-) False mbd2
XM_039780657.1 mRNA upstream 361162 3168626 ~ 3246887 (-) True mbd2
XM_039780656.1 mRNA upstream 361163 3168627 ~ 3246887 (-) False mbd2
XM_039780658.1 mRNA upstream 361163 3168627 ~ 3246884 (-) False mbd2
XM_039780653.1 mRNA upstream 470085 3277549 ~ 3281952 (-) True LOC120545955
TU233144 other downstream 867019 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 1298386 1170203 ~ 1170789 (-) True G171868
TU233470 other upstream 177358 2984822 ~ 2985260 (-) True G172311
TU233826 other upstream 1079124 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 1334389 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 1963353 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 2042484 4849948 ~ 4897357 (-) False odf2a

Expression Profile