RNA id: XM_039780586.1


Basic Information

Item Value
RNA id XM_039780586.1
length 3612
RNA type mRNA
GC content 0.47
exon number 20
gene id stxbp1a
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 9622425 ~ 9706925 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGCCTCACGTTTCTAAGaGATTATGAATGATGTCATCAAGAAGGTGAAGAAGAAGGGAGAATGGAAGgCACTGATCGTGGACCAGCTGAGCATGAGGATGTTGTCGTCCTGCTGCAAGATGACAGACATCATGACAGAGGGCATCACCATTGTGGAGGACATCCTGAAGCGACGAGAGCCTCTCCCCAGCCTGGAGGCCATTTACCTGATTACACCCACAGAGAAGTCTGTCCACACCCTCATCGCAGACTTCAAAGACCCTCATTCAGCTAAATACAAGGGAGCCCATGTTTTCTTCACTGACTCCTGCCCTGATCCTCTCTTCAATGAGCTGGTGAAGAGCCGCGCTTCCAAAACCATCAAGACTCTGACGGAGATCAACATCGCCTTCCTGCCCTACGAGTCTCAGgtatacTCTCTGGACAATCCAGATGCCTTCCACAGTTTCTACAGTCCCCATAAGACCCAGCTGAAGAATCCGGTGATGGAGAGGCTGGCTGATCAGCTGGCCACGCTCTGTGCCACCCTGAAGGAATACCCTGCTGTCAGATACCGAGGTGAGTACAAGGACAACGCCACCCTGGCCCAGCTGGTTCAGGACAAACTGGACGCCTACAAGGCTGATGACCCAACTATGGGAGAGGGTCCAGATAAGGCTCGCTCACAGCTGATCATCCTGGACAGGGCGTTTGACCCCGTCTCTCCTGTCCTGCATGAGCTCACCTTCCAGGCCATGGGCTACGACCTGCTGCCCATCGAAAACGACGTCTACAAGTATGAGACCAGTGGCATCGGAGACTCCCGTGAGAAGGAGGTTCTGCTGCACGAAGACGATGACCTGTGGGTGAGcctgagacacaaacacatagctGAGGTGTCCCAGGAAGTGACGCGCCAGCTGAAGGAATTTTCTGCCAGCAAGAGGATGAACACTGGGGAGAAGACCACAATGAGGGATCTGTCCCAGATGCTGAAGAAGATGCCTCAGTACCAGAAGGAGCTcagcaagTACTCCACTCATCTGCAGCTGGCTGAGGACTGCATGAAGCATTACCAGGGAACAGTGGACAAGCTGTGCCGTGTGGAACAGGATCTGGCTATGGGCACAGATGCTGAGGGAGAGAAAATCAAAGACCCCATGAGGGCCATCGTGCCCATCCTGCTGGATGCCAACGTCACCACGTATGACAAGATCCGCATCATCCTGCTCTACATTTTCCTCAAGAATGgcatTACGGAGGAGAACCTGAACAAGCTGATCCAACACGCTCAGATCCCCCCTGAGGACAGTGAGATCATCACCAACATGGCTCACCTGGGCGTCCCCATCGTCACAGATTCCACCCTGCGCCGAGGAAAGAAGCTGGACAGGAAGGAGCGTGTGAGCGAGCAGACGTATCAGCTGTCCCGCTGGACACCACTGGTCAAGGACATCATGGAGGATGCTATTGAAGATAAGCTGGATACCAAGCACTACCCCTACATCTCCACCCGCTCCTCCGCCTCCTTCAGCACCACTGCagtcagTGCTCGGTACGGCCACTGGCACAAGAATAAGACACCCGGAGAGTACCGCACTGGGCCCCGCGTCATGGTCTTCATCATCGGAGGCGCGTCCTTCAGCGAGATGCGCTGCGCCTACGAGGTCACGCAGGCCAATGGGAAGTGGGAGGCCATCATTGGTGCCACCCACATGCTCACCCCCACCAAATTCTTATCGGACCTGCAGCACCCCGACTTCCGAGAGTCCACTAGGGTGTCCTTTGAGGACGCAGAACCCACACCCGAGTGAGGCAGAGACAGattgggagggagggagagagaaatcaCACTGAAAAAAGATCGACCCACATCTTCACCCCCACCAGCCTGCTGGAGCAGCTCAAGGCCATGAACAAACCAGACGAGGAAGTTACAAGCTAAGATCCTCCAATCacgtctctctcctctttaccTCTTAACCTCTACCCCCCTTTTCCCAAAAACCCATCATTGTGTATGCATCTTGCTTGAGAAGAAAAATACATCttagatgataaaaaaaatatatgttgtaTCAAAGAATAACAATGTTGCAAGTATTCTCATGTTTTACAATGGATGCAACTAAATGAACTTATTTAAAAAGGTTTAAATATCAGAACAGAAGGCCATTTAAAACTGAAAGTACcaaaatgtaatattgtatgcTATATTTTCCCTCGTTTGTTCCTTTGGGTTTGTCGGTGTGAGTTTTATTGGAAGCGGGTCGAGGAGGGATGTGCAGTTTGAGAGGTTGATGTTGTAAAATACCTGTCGGTCAacatgcaatatatatataaatatattcatcAGAGAGGAGTCCCCCTTGCCCATTTGATATGTTCGTATTCAGTAGCATGCTTGGACTTGTGTGGACCGTTTATGTGTTTGTATCCAGTGTGGATGTTCTGGGACCCGCAGAGTTGGCACTTTTTCCTAGACGTCGAGCTTGAATGCTACACTGAAAACCTTTGTTTTGAGTATCGATGAAGTAGAAATACTCTCTTTGAAACTATTCCCGAAGCCTTATACTCAACGGCCTGTCTGGAAACTTTAGCgacaaagaaaaaacatattttgatgGAAATATTGAACGGAGAAGCCGACTACGCTACAggagtgtgtatgtttttgatAGAGTTTTTGGCCATGAGACCATTATGTATCCAAGCTAACCTCACAGTCCTCTGCAGGGATATTAGCAAGCTACTAGACCACCGCGTGTCTGATACtcaaaacatacattttcattgaagtatttgtttaaaaacgcTCGTTTGGGCAGAAATTGGAAAGAGAGAGTTCTGCAAAAAGCCAGAATTATCCCTCCTCCGGTTAACGAGACTGTAAAGTATTTACTtgccacaaccttttcctttcTCCAGAGAAACTCCACGTTTTAATGTCGAAAAGGCCGTTGCTTGCTAATATGTAATGAATAATCCTAAAAAGGGCCAATTGTATTTCAGTATTGTATTCTGTCAGATTAAGTCTTATCATTGGTTAGTAACTATGTTTAATTGGGCCGTGCACTGAGTAGTGTTGCGTATGGGCCATATGTTGCTGTTTTAGCGTCTCACTGTTGACTGGTGATATTTCTGACTGTGAAGTAGCGATACCTTTcctttaaaaaatgtcattgtgaagCCGCCGTGTTTGTGATGTTTTAGCTGTAGCTGTTAGTGGTCAACACAGAAAAataaactaatatatatatatattttctttgtctgtttccTCCTCTGGTGCAATGTAAAACCCTCCAATGGTGAATGGCTTTTATTTCCTCCTCCCTTCCCTCTTTCCTGGCCAAACAAGTTGTACATTGCACTATAATGCGTTTTCTGTGATGCAAACGCTTGACTTTgcgttcattttcttttttattataatttgctGTTGTATAGGGTTTACTCTGTTAAATCAATTGATTTATATCAGAATTATTTATCAGAGAAAAGATAATAGCGATGCATAGTCCTACAACTGTTTAACTTATCGGGATTGTATGTTTGCGAGTGTTTAAGCACAAACAAAATTTCCATGTGTACCTATGTACTAAGGCTGTCTAATAAATTGGCTTCCATTA

Function

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636702.1 lncRNA downstream 284007 9337767 ~ 9338418 (-) True LOC120545476
TU235467 lncRNA downstream 323947 9297725 ~ 9298478 (-) True G173944
TU235466 lncRNA downstream 324811 9296393 ~ 9297614 (-) True G173943
TU235465 lncRNA downstream 337092 9285076 ~ 9285333 (-) True G173942
TU235464 lncRNA downstream 338397 9283823 ~ 9284028 (-) True G173941
TU235693 lncRNA upstream 88918 9795843 ~ 9796971 (-) True G174116
TU235695 lncRNA upstream 88918 9795843 ~ 9796971 (-) False G174116
TU235681 lncRNA upstream 154076 9861001 ~ 9903007 (-) False grin1a
TU235726 lncRNA upstream 337707 10044632 ~ 10045354 (-) True G174139
TU235734 lncRNA upstream 381357 10088282 ~ 10088523 (-) True G174143
XM_039780355.1 mRNA downstream 765696 8852787 ~ 8856729 (-) True ssna1
XM_039780107.1 mRNA downstream 810331 8795830 ~ 8812094 (-) True alad
XM_039779445.1 mRNA downstream 838083 8699959 ~ 8784342 (-) True LOC120545257
XM_039778936.1 mRNA downstream 956969 8664825 ~ 8665456 (-) True pmchl
XM_039780312.1 mRNA downstream 988358 8625588 ~ 8634067 (-) True LOC120545754
XM_039780587.1 mRNA upstream 14769 9721694 ~ 9732993 (-) True slc31a2
XM_039780201.1 mRNA upstream 27530 9734455 ~ 9778180 (-) True arrdc1b
XM_039778813.1 mRNA upstream 75272 9782197 ~ 9792340 (-) True LOC120544929
XM_039780407.1 mRNA upstream 92159 9799084 ~ 9831228 (-) False mamdc4
XM_039780404.1 mRNA upstream 92159 9799084 ~ 9831228 (-) False mamdc4
TU235399 other downstream 551217 9070162 ~ 9071208 (-) True G173900
TU235313 other downstream 988526 8625482 ~ 8633899 (-) False LOC120545754
TU235162 other downstream 1264398 8357723 ~ 8358027 (-) True G173727
TU234856 other downstream 2462338 7152870 ~ 7160087 (-) True G173470
XR_005636815.1 other downstream 2801559 6820812 ~ 6820866 (-) True LOC120546140
TU235701 other upstream 135887 9842812 ~ 9843499 (-) True G174120
TU235686 other upstream 154076 9861001 ~ 9874345 (-) False grin1a
TU235744 other upstream 390451 10097376 ~ 10108283 (-) False gtf3c4
TU235941 other upstream 1454315 11161240 ~ 11164355 (-) False LOC120545042
TU236123 other upstream 2650003 12356928 ~ 12357890 (-) True G174439

Expression Profile