RNA id: XM_039780597.1


Basic Information

Item Value
RNA id XM_039780597.1
length 6405
RNA type mRNA
GC content 0.51
exon number 37
gene id nup214
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 21546834 ~ 21584572 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tatgacgtttttatggcAAAATCGCGCGGTGTCCTCCTGACAGACTAATGTGGCTCACCAGAAATTTGTCTCAGATACAAACAAGGAAGGTATAAACTAAAACAACAGATCGCCTGGAAAAGTATCAACCTTGGTGCTTTAAAATGAGTGACGACACAGACTCCCCTCCTGATAGGGAGATGAAGgacTTTCAGTTTCGTCAGATGAAGAAAACAAGAGTCTTTGACCCTGCTGAAGATTTGCCCAGAGAAAGAACTAGTCTGCTTACCATCTCAAACAAATTTGGTTTAACTTTTGTCGGACTCCACAAAACATTCAAAGTTTACCTAACTCAAGACATTCTGTCTGATAAATTTGACGGTAACACCAACGAAATAGTCGAGGGTACACCAGCATTGGCGGAGGTTAATGTGGATCTGGCTCTGCACCACTTGGCTCTCAGTTGTGATGAACTTACTTTATCAGTATGTGGCATGACTGAGGAGGCGGGATTGTCCTTCACATTCTATGATGTCCGCACCTTTATGAACAAGACAAGACCACAGAAGCTACCTTTTGCATCACTGCTGCCAGCAGTACCCCCTGGCAGTTTAGTGCAAGACCTGAAGTGGAATCCTGTGCAGGCATCCATgttggctgtctgtctgtctgacggCCGTATGATGATTTTGGATGTTACTGACAGTGTCAAAGTGCAGGCCGAGCTACCTGCTTCAAGCGGCATCACGTGTCTTTGCTGGAGTCCAAAAGGAAAACAAGTCGCTGCAGGAAAAATGAATTCCGCAGTCAGTCAGTATACACCAGCACtagaagaaaagaaagttaTCCCATGTCCGAACTTCTACACCTCTGACGAACCTGTCAAAGTTCTGGATGTGCTGTGGCTGAGAACCTTTGTGTTTGCAGTGGTATATGCTGCTGCAGATGGCTCCCTTGAGACCCCTCCTGAGCTAGTGTTGATCTCCCTTCCTctatgTTCTCCACATGGCCACAACAACAAGaAGAAGGATGAGAAGGTGGACATAAAGTATTTGAACTTTAGTGAATTAGTGTACGGAAGCTGCACTGAGCGACAACACCACTACTTTCTTAGCCATATAGAGGACTGGGACCTTGTGTTTGCGGCATCAGCAGTTTCCATTGAAGTCAGCGTCATAGCCGCCAGAGAGGACAAGATCTGGGAGCTTTGGATCCTGGAAGATGCAAGTAGGGCTGAGCTTCCAGTGACTGAGACAAATGAAGACACGCTGCCCCTTGGCTTAGCCATAGACTACACCAGCCAGCAGGAGATCTACATCActgatgaGAAGACCTTGCCCCCAGCGCCCACAATGCTGATGCTCTCCACAGAGGGATTACTCTGCCCATTTGCTCTGCTCAACGTTAATCCTGGGGTTAAGCAACTGGTCTCAGCCCCCACTGCCCTCGCCTTGGATGGGGAGAGACAACCCAAGCCAGgTTCTCTGGCAGCCCAACCACCCAAAATTGCTGCCTCCTTCCCATCTGTCCCAGCAACATTCACAAACTTTAGTCTTACTTCAGCGGCTGCTTCTACTCCTTCAGCCCCTGCTGCAGCTTCCTCTGCTGCCCCGTTCAGCATGGTTCCCACAGCTCCTGTTTCATCGGCATCATCAAGCTTCAGTTTCTCAGTGCCAACTACGTGCTCCACCTCTGCACCAGCTTTCTCCCTGGAGGTATCCACACCTTTTGGCTCAGGGTCCTCAGGCTTCTCCTTTGCCTCCAAACCTCCCTCTGACACTCCCTCAGCACCTTCAGCGTTTTCTTTCACCCCTTCCATCAAACCATCAGCAGTGGCAGCTCCAATTCCAGCTCTAACACCCCAGAACATTGCTACTGCCTCTCAACCAACAGTGAAACTTAATCTAAATGAGAGGTTTTCAGCACTGGAGACACCAGCACCACAATCTTTTTCGTTTAATCCCTTGCTGCCCAAAACAGTTGCCTCCAGTTCCAGTAGTTTGACCGCCCCTCCACTCTCAGCCACTAAGCAACCTGCTGTGTTGACTCCAGTGCGTCCAGTTCAAACCAGCACACCACCCACAGTCGTCCAGAAACCTGCACCTGCTGCCCAGGGCCGTCTCCAAACTCCACAGGCAGCTGTTAGTGTGAAGGCCCTGGAGAAACAGCTACAGCAAAAGAAAGACTCTGATCCCATTATGGCTGGTATATTAGAGGAGATTGCACACTTCCAGAAGGAGTTAGATGACCTTAAGGCACGAAGCACAAGAGCTGACTTCAAGGTTGGCACAAATGAGGAGATGAAGGAGTTGAGGAAGGAGTCAGAGGACCTCCATATTTTCACCTTGGAGATCAAGGAAACAACAGAGTCTCTCCATGGGGACATTGGTACACTGAAGACCACCTTACTGGAGGGCTTTGCTGGGGCAGAAGAAGCCAAGGCTCAGAGTGAGCTGAGCAGAGACAGAAATTACAGACAGCTACTGTACAAAAAACCTCTGGACCCCCGCAGCGAGGAACAGCTCAAGGAGATTCGCAGGCTTTACCAGTATGTAATGTTTGCTGTGGAAGATGTAAATGACGTACTGGATGTGGAATGGGAGAAACAcctggagaagaagaaaaagcagaAACACATGGTCGTGCCAGGGCGTGAGGGACTATTTACTACACTGGCCAACAACCTGTACATTATCAACCAGCAGAAGAACAGATTGGACCAGTTTATTAAGCAACTCACTTCACTGCGCCTCTACAACAACACTACCACTCCAACTATACACTGCAGTTCTGCTACAGCAACAACTGCTGGCTTGGAAAGCGAGCTGGAGAGTTTAAGGGATGCACTCCTGAAAGCCAGACTGGACACCTCCCCTCCTAAGACCAAACCCAAATCTCCAGTCAAGATATCGCCAGTGAAACAGTCCCAGCTGCGTAACTTTCTCTCAAAGGGGCAGATGCCTCCTGTCCGCTCAACTGCACCAGCCAACCTGTCTCGCTCAGCCTTCCTTTCACCTAAATACTACGAGGACTTGGATGATGTAAGCTCTACGTCCTCCCTGTCCCTGGAGCCTCACCCAGCTGacttggaggaggaggaggaactgCAGCCTGAACCCCTTCCCCTTACTGTCATTCCTCCAGCATTGTCCACCCCCCGCCACCCCACAGTCGTGAGGACCCCCTCTATCCTGCCAGGCTTCGGGGCCATTCAGTCCACCCCTTTAACAAAAATGAACTCAGTACAGGGTATGGGGTTTGGACTCAGCCCTATTGCCAGCCCTGTTCCAACCAATAAGATCAACCTCAGCGGGGCTGAAAGCACTGCTCTTGCCACAAAGACAGTAAAACATGGAGCCCCACCAACTGAGAGGAGCATCCCTGTCACCATCCCGGCCCAGCAAGCTGCAGCCAATGCCGCTGTACGCAGACAGATGGCCAATCAGAAGACAGCTGTCGTCAGTACTTCCTTGACAGAGTCCACTTTGAAGACTGTTCCTCAGGTGGTCAATGTCCAGGAGCTCAAGGACAAAGGGCCTCCAATGCCAGTTTCCAATATCATCAGCTCATCGGTACCAGATCCAGCAGCTCCGGTCTTTGCAACAGTTTGTTCCAACCAGGCCAAACGAAACCCTAACCAAGGTATGCAGAAGATGTCCGCTGAAAGTACAACCACCCCACAGACAAGCTTTGTATTTGGTCAATCATCCAAACCGGATGTTTCAGTGGCTCCAGCTAGCTCAGCAGAGCAAAACACCAGCAAAGGTTTCTCCTTCGCATCAGGGTCCACAGGCTTCAGTTTTGCTTCTGTTACGCAGGGAGTTGGAATCTCACAAGTGAAGGATTTGAATAAATTCTCCTTTGGTGGAAATGGCAAGATGATGTTTGGCCAGACTGGAGAAGAGCCATTCTCCCTCACCCCAAAgtccacctcccctgctcttggCACTGGGTCTCCCACCCTGCCTCCATACCCGTCAGGTGACAAACCCGCCTCTACCACAACTGCCTCCAGGATAGAACCTCCACCCCTTAAGACAATTGGAGGAGAAACTCTGGGCTGTTTCTCTGGACTACGTGTGGGCCATGGAGAAGAAGCGAAAGATTCAGCTACAAAACCAGCTGTTGGCTCATTCACCTCTGGAGAAACTGGACTTGGTATGGGCAAGGGAGCAGCACAGTTTAGCTTTGTTGCAGGTCCCCAAAAGTCTGCAGATGATTCTACAGGAACAGACTTGTCCAAGGGGACAGCGTCAGGCAGTTTGTTCAAGCCTCCTGAACCGAACCCCAAGCCGGCCTTCTCTGTTACCCAATCTAGCTCAACTGCCTCAGCTTCACCTACGTCTTTCGGTAGTCTTCTTGCAGCTTCTTCAGACACCTCAGAGGAACCAAAAGTTTCCCCACAGCCTTCAGAACCCACACCACCCCCTGATAAAGAACCTAGTACTGGACCAGCTGTAGTGAGCGCCCTTGTAGTACCTGAGCCCGCAGCGGATGCAGCCGTCACAGAAACAACAGCAGCCGCAGTTACAGCACCAACACCCCCACTTCCTTTGGCCACAACGGCCCCTACCCCAgaccctccctcctccatcacCGCACCAACTGTAGCAATCCCTCCAACTACAGCCAGTGCAGCTGCCACAGTAGATGCCAACCCAGACagcagcaccaccaccaccactgctCCTCTGCCTACTTCCGCTGCTGCTGTAGCTCCTGTCTCCCAGGTAGCTCCACCAGCGTTCCAGGTGCCCAGTTCTGACAAACCAGGTTCCATTTTTACTCAACCTGCCCCTACAATAACAGACAGCAGTTCCCTTGGACTTACACCTGTTATCAGCACAGTTGCTGCTGCAGCCACCACTACCACGCCTGCTGCTGTTAACAGTACAACTACTACTGATGCTAGCGTTGTGTTTGGGCAACCTGCTGCACCACCAGCTTCCTCGGCCCCTCCACCCCCAGCATCCACAGGATTTGGCTCAACGGCGTTTGGTACATCAACTGGAACTGTTTTTGGCAAATCTGTGTTTGGCCAGGTGAGTGGCTTTGGCCAGCCTGCCAGCAACCCTGAAACATCCGGTGGCTTTTCTTTTGGCCAATCAGCATTTGGAGCAAGTTCTAACAGCGCGACTACTGGAGGAGGTCTTTTTggtgctgctactgctaccaaTGCCAGTTCCTTCTCCTTTGGCACAAGCAGTGCCAACACCGCCAGCAGCACTGGCTCAGGGCTGTTTGGACAAACCACAACACCAGCATTTGGCCAGAGCTCTGGATTTGGCCAAGCGTCTGTGTTTGGGAGTAACACCACCACATCCTCATCTACAGGGTTCAGCTTTGGACAGCCCTCAGCTTTTGGCTGCTCTTCTGCCACCCCTGTGTTTGGCCAACAAGCGAGCAGCGGGAGTGTATTTGGACAGCAGCAGCCATCATCTGGTGGGACTCTGTTTGGCTCAAATTCAGCCAATACAGCAGGCTCAGCTGCTGGTGGAGGGTTCTTCTCTGGCCTTGGAGGCAAACCAAGCGAAGATGCTGCCAACAAGAACCCATTTGGCACCAATGTCTCCACCGGAGGGTTTGGGCAGCCTGCTCAGACAGGTGCCAACACTCTGTTTGGGAATAGCGGTGCCAAGACCTTTGGTTTTGGACAGTCGTCCTTTGGTGAGCAGAAACCTAGTGGGACCTTCAGCACCGGTGCAGGGAGTGTCGCATCCCAGGGATTTGGCTCCTTCTCTTCTCCAGCAAAATCAGGTGGTTTTGGCAGTGCTCCAGTGTTTGGGAGCCCCCCTTCCTTTGGTAGTACCCAAGCATTTGGTTCTGCAGCAGCATTTGGATCAAGTCCTTCCTTCCCCAACAACATGGTTCCCTCAGCTGGTAAAGTCTTTGGAGAGGGAACAGCAGCTGCCAACATGGGAGGATTTGGGTTTGCCTCACCTCCCAGCGGCCCGTCCTTTGGTgctctagccaatcagagtgcgCCATCATTCGGGGGCCTGGCCCAGCAGGGCTCTGGGTTTGGAAGTCAGCCCAGCAGCTTCTCAGGCTTTGGACAACAGCCACAGGCAGGAGGATTCTCTGGAAACACCTTTGGCTCTGCAAACCATCAGAGAACCTCATGAGATTAAAAAGGCCCAGACATGTGAACATATATCACCACGTGGCAGCACATCATCACCTGGGACAATGCTGCAATACCACACCGACACTGGCCGTGTAAAGAATGATCAATGTGACCTCAGTAAAATGAGTCCGTAATtgaaattatattaaaaaaaatgtttgctctttgttgtttttttcaaccaacTATTTTAGACCTGTTCTCATCCTACTGGATTTTCTCGACCTTATGTAAGCCGATTTAAATTGTACaactggggagagagagagaaattaaaGTAACTATGAAATTAAAGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238978 lncRNA upstream 136375 21401914 ~ 21410459 (+) True G176565
TU238962 lncRNA upstream 147831 21397647 ~ 21399003 (+) True G176559
TU238944 lncRNA upstream 391979 21151267 ~ 21154855 (+) True G176542
TU238899 lncRNA upstream 609542 20936806 ~ 20937292 (+) True G176507
TU238872 lncRNA upstream 929116 20616036 ~ 20617718 (+) False pappaa
TU239103 lncRNA downstream 70631 21655203 ~ 21655587 (+) True G176644
TU239168 lncRNA downstream 379524 21964096 ~ 21964825 (+) True G176696
TU239176 lncRNA downstream 386576 21971148 ~ 21971498 (+) True G176702
TU239177 lncRNA downstream 387066 21971638 ~ 21971985 (+) True G176703
TU239178 lncRNA downstream 387537 21972109 ~ 21972443 (+) True G176704
XM_039779848.1 mRNA upstream 3579 21513173 ~ 21543255 (+) False LOC120545487
XM_039779846.1 mRNA upstream 3579 21513173 ~ 21543255 (+) False LOC120545487
XM_039779849.1 mRNA upstream 3579 21532633 ~ 21543255 (+) True LOC120545487
XM_039779847.1 mRNA upstream 3579 21533507 ~ 21543255 (+) False LOC120545487
XM_039778726.1 mRNA upstream 37203 21507480 ~ 21509631 (+) True LOC120544873
XM_039780603.1 mRNA downstream 16770 21601342 ~ 21610838 (+) False LOC120545922
XM_039780602.1 mRNA downstream 16772 21601344 ~ 21610838 (+) True LOC120545922
XM_039778941.1 mRNA downstream 29325 21613897 ~ 21647241 (+) True prrc2b
XM_039778945.1 mRNA downstream 29325 21613897 ~ 21647241 (+) False prrc2b
XM_039778943.1 mRNA downstream 29325 21613897 ~ 21647241 (+) False prrc2b
TU238926 other upstream 599779 20946684 ~ 20947055 (+) True G176526
unassigned_transcript_963 other upstream 2029528 19517235 ~ 19517306 (+) True trnac-gca_32
TU238450 other upstream 2159392 19380277 ~ 19387442 (+) False LOC120545529
TU238143 other upstream 2823049 18676044 ~ 18723785 (+) True srsf9
TU239244 other downstream 694308 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 911841 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 947336 22531908 ~ 22537337 (+) False G176870
TU239589 other downstream 1421695 23006267 ~ 23008812 (+) False klhl8
TU239701 other downstream 1598101 23182673 ~ 23184262 (+) True G177094

Expression Profile