RNA id: XM_039780632.1


Basic Information

Item Value
RNA id XM_039780632.1
length 3023
RNA type mRNA
GC content 0.51
exon number 25
gene id lrsam1
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 3890688 ~ 3931682 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAACTGAGCTAAGAAGAAGATGAGCTGCAGTTATTTGTTATGATTTAGCAACATTCATAGGGAAGCGGTATCAGCTGAGGAGGGCTCGTATCGGGAATATTGCTGCGTTTCTCTTATTTTATGAAGTAGGAAGGTTACGTtgaataacgttagctactttcggtccccttcttttttttcgaCGACTGACTTGGCCTAACGTCCCACTTTAATTTgaccagctaacgttaacgttacccaGAAGAGAGTGAGAAGCAGCGAATCAACCCACAGCCTACGCTGTCAGGGCTTTCCCGCCTGTCCATCAGTCCTCTGAAGTAGCTCTCGTAGTGGAGGGACAGGAGGGAAACCCAGCAGGTAGAGAGGCAGCAGGACGGGCAGGACTTAGCATGCCTCTGTTCTTCAGAAAGAGGAAACCCAGCAACGACTCCCAGACGAGACTGGAATATCAGCTGTGCCTGTCTAAGGAGGCAGGTGCTGATGACATCCTTGATATTTCAGCTTGTGAGCTCTCAGAGGTTCCCTCAAGTGCCTTTTCCATTTGCAAGGTGCTACAGAAGAAGGTCCTTATCCTCCATAACAATGAACTGAGGTCATTGCTGCCCAAAGGATGTGACATCAACGCTCTTGCCACTTTAAAGGTTTTGGATCTACATGAGAACAAGCTCACTTCACTCCCAGAAGACATTGGGAAGCTGGCGTCACTGCAGATTCTGAATATGGAGAGGAACCGTTTAAAAGCACTGCCGGACTGTATCGGGGATCTGCGACTTCTCCAGACACTCAATTTAAAGGGTAACTGTCTCAGTGAGCTGCCGTCCTCAGTTGGTTCTTTGAGCAGCCTGCGCACCCTGGACCTGAGTGACAACAGCATCGTCCAGCTCCCCAAAGCTCTGGTCTACATCCGCACCCTTGAGAGCTTTACACTTGATGCTGCAATGATGTCCTACCCGCCTGCGTCCGTGTGTAAAGAGGGCACAGAGAGCATCCAACGCTTCCTATGCACCGAGCTGGGAGAGGAGTACTGCCCCCCATCCCAGTATCTCCTGCCGGTGCTGGAGAGTGAGTGTGGGAAACAGAACTCTGACTGTGTGGATGGCTTGGACGAGGCCTGGCAGAACAAATTCAGTGACTACGAGAAGAGAAAGGAGCAGAAGCAGCAGTCAAAGCTGGCCTTCGAGCGGCACctggaggagaagaaaaaagagcACACCCAGCTTATACTCATGAACTCCTCCCGCAAGGAAAACATCCTCAACTCCGTCCGACAGGACCAGGAGCGCCTGGAGCTGGAGGTCAGCCAGCAGCAGAGGGCTCAGGAGGCCGAGAGGCTGCTGGTGCTGGAGAAAGTCAGACAAGCTGAAGACAGCATCAGCAGTCGCGTCTGCAACATGCTGATGGACAAAAGCAGGCAGAAAAAAAGTGCAGAGTTTCTTCAAGCCATGGAGGAAGATCGGATCCGTATGGAGCATCTGACTGCCATCACACAGGAAGAAGCCAATTCACTGAGGAAGAGGGAGGTGGCAGttGCCATGCAGAAGCTGCTGTCAGACAGCTGTGCTATGAGCCTCCTCCAGGAGGCCAGTGACTTTCGCAGACAGAGCCTGGTGTCTGAGGCCTACAGaagTATGGAGAATTTGGACAGGAAGTTTGATAAGATGCTGTCCCTCCAAGTTTTGGACAAATCTAAGGCCATCGCCCAAATCTTACAGGAGGAGGAGATGCAGAAAGCAGCGTTCCAGGccctgcagctgcagaaagaTGCTGTACACGGCTACATCCGCAACCAGATCAATCTCATAGAGGGGGAGTTAATGCAGCTGACAAGACTGGAGATTAAAAGACGCAGTCTGGATGCTGAGAACCTGCAGGAGGTTCTGGTGGAGCAGCGCACAGCTCTCAGTGATTTGTTGCAGCAGCTGCTGAAGCAGAGAGACCAGCGAGAGCAGGAGCTGCGGCAGGTTCTGGTGGAGATGGAGCTGAAGTCTGAGTCCAATCAGCAGAACTACTGGATGATCCAGTACCAGAGGCTGTTGGATGCCAAGCCGCTGTCGCTGCGCATGCAGGAAACGGGCGTGGAGAAGGAGTTGGTCAACCTGTTATGCAAACTGTCCGCTCAGCACTACCTGCCCATCCTGGCTCATCATCGAGTGACAACGAAGGCCCTTCGCCACATGAACTCATCTGACCTCAAGAAGCTTGGCATTAATGAAATAGGAATCCAGAAAGCTCTTCTGGACTGGGCTCAGGAACACTACCCTGAAGGAGCTTGTAAGGCTGTCCAGCAGGACGAGGGGGCAGAGATTGCCCCCACAGCTCCACCCCTTTCCTCCCCTCTGTCGTTTCCCAGCACCTCCACCATCCAGATGCCCAGCCCCCCCCTCACCCCAGGGACCCCCGTCACCCCCTCCGCCCCCAGCCCTGTGGACGGACCGGGGGGCTCAGAGTGTGTGGTCTGCATGGAGACCGGGtctcaGGTCATCTTCCTGCCCTGTGGCCATGCGTGCTGTTGTCAGGTCTGCAGCGGCGCTCTACAGAACTGCCCTCTGTGTCGGGGCAACATATCCCAGCGTATTCGCCTCTACCACAGCTAGGACCAACTGCACTGTGCTACTCCTTCACTCTCTTTGTTCATGCATGGTCATATAGCTGCTGTGAGCTGACCTCATGTATAAAAAAAGCTTTGAGCAGGTTTTTAAAGAGCTGAGCCACTTTAATTTTATCAACCAAAAGTCTAAAtagatttattttaattgtcttgtgtttttggttgtgtGAGCCTATttcattttgttctttttaaattccattattttttttaaattatactgtatatttagagCCAAGGGGACATACCGCTCACTGGTTGAAGACCGACTGTACTTTCTTATTATAGTTTCTCACTTGATGTGTGCCTTCTTCTGAAAAAGtcttttttaaaactatttgtCTGTGTTGTCAACCAAAGTAACACCTATCCAACATTTATATAAGTTAACTAAAACATAATCTATTGATTGTTA

Function

GO: NA

KEGG:

id description
K10641 LRSAM1; E3 ubiquitin-protein ligase LRSAM1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233804 lncRNA downstream 11369 3818907 ~ 3879319 (-) True G172600
XR_005636751.1 lncRNA downstream 113546 3776110 ~ 3777142 (-) True LOC120545877
TU233755 lncRNA downstream 145686 3744625 ~ 3745002 (-) True G172564
TU233747 lncRNA downstream 182864 3707584 ~ 3707824 (-) True G172556
TU233744 lncRNA downstream 207304 3682351 ~ 3683384 (-) True G172553
TU233835 lncRNA upstream 40928 3972610 ~ 3976946 (-) True G172627
TU233840 lncRNA upstream 96704 4028386 ~ 4028624 (-) True G172632
TU233846 lncRNA upstream 125755 4057437 ~ 4057638 (-) True G172638
TU233986 lncRNA upstream 404407 4336089 ~ 4339898 (-) True G172743
TU233998 lncRNA upstream 470129 4401811 ~ 4402024 (-) True G172755
XM_039780664.1 mRNA downstream 50868 3820424 ~ 3839820 (-) False ndor1
XM_039780666.1 mRNA downstream 50868 3821437 ~ 3839820 (-) True ndor1
XM_039780665.1 mRNA downstream 52047 3820109 ~ 3838641 (-) False ndor1
XM_039780782.1 mRNA downstream 205006 3683543 ~ 3685682 (-) True ier5l
XM_039779252.1 mRNA downstream 260376 3600538 ~ 3630312 (-) True crata
XM_039780457.1 mRNA upstream 207484 4139166 ~ 4147813 (-) True cdk9
XM_039780218.1 mRNA upstream 264064 4195746 ~ 4207317 (-) True nadk2
XM_039780220.1 mRNA upstream 264064 4195746 ~ 4207316 (-) False nadk2
XM_039780383.1 mRNA upstream 339302 4270984 ~ 4306484 (-) True dqx1
XM_039780050.1 mRNA upstream 376294 4307976 ~ 4332155 (-) False thnsl2
TU233470 other downstream 905428 2984822 ~ 2985260 (-) True G172311
TU233144 other downstream 2288532 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 2719899 1170203 ~ 1170789 (-) True G171868
TU233934 other upstream 210171 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 839135 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 918266 4849948 ~ 4897357 (-) False odf2a
XR_005636625.1 other upstream 918266 4849948 ~ 4897357 (-) False odf2a
XR_005636634.1 other upstream 1464951 5396633 ~ 5400678 (-) True LOC120545230

Expression Profile