RNA id: XM_039780653.1


Basic Information

Item Value
RNA id XM_039780653.1
length 2191
RNA type mRNA
GC content 0.57
exon number 3
gene id LOC120545955
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 3277549 ~ 3281952 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGCACCGGGCACAGTAACCATGGCAACGGGTAAACAAGAAGCTCAGAGACAGACGAGAGAGAAAATGTCGgcaagaagaaaagagagagcagaggaggagaacAAGGAGGTCTTctcggaggaggaggagaggagtatCGAGGAGGAAGACCTTGAAGAGGCAACGACGGAGGCGGCCCCCTCCACTGCTTCTAGAAGTAAACCCGGACCACCAGAACGACAAAGCGTCGCCGAAATCCCGGAGACGGTGGACGACTTCCTGAGGAACTTCCTCCGCAGGGCCGGCCTGAGCCGAACTCTGAACCGCTTTGAGGCCGAGTGGTACGGCTCGGCGCAGAGACTCCTGCCGGCGGCAGCGACGTGCTTCTCGTTCGTTCCGGATGCCCTCACGCACGGGCAGCTCCTCCGGAGCGAGCTGGAGACGGTCCGCAGAGACACGGACCTGCTCCGGCAGGAGGTGCTGGCGGCGGGGGAGGCGCTGGTCAGGACGCAGAGGGAGAGGGATTTCCACCGGCTACAGTACCGACGAGTCGCGGGGGACAAAAACCGGCTGATAGAGGACTTTAAAGAGCTGAAGAAACACCTGGAGTCCTACGAGCCGGCGCTGAGGCAGCTGGAGGACAAATATCAAGCAGCTCTGAGGCACAAAATGCTCATCGGTTTAAAAAAGGACCGAGTTCTAAACACCACGGAGGAAAAATCCCGAACCGCGACAGAGAAAAGCATGAGAAAGAGCGACAGCGCCGATAAGTCGCCGGCAAAGAGCCCCGTAAGCAGCAGACATCCGAAGGACACGGAGTTTCCTGCCGCCTGCAGCCGCCCGGGGAACCCTCACCTGGCTCAGGTGGGATTTGAGAAATGCAAAAGCCCCGGTTCCTTCAGCCTGTCCTACTCCATCAGAGCCCACACGCTCCCCATCAGCTGCATAGACCTCCACCCGCGGAAACTGATCCTGGCCACCGCCAGCGATGACCGCAGCTGGAGGCTGTGGGCGctgcaagccaacggagagaaGGTTGGTGAGATGGTGCTGACAGGCGAGGGtcactctgattggctgtctggcTGCAGCTTTCACCCTGATGGGACAAAACTGGCAACAACCAGTGGAGACTCTATGGTGCGTCTCTGGGATTTCTCTCGTGGCCGCTGCGTGTTGACGCTGCCCGGTCACAGCCACCCCACCTGGGGCTGCTCCTTCCACTCGTGCGGCCATTTCCTGGCTTCCTGCTCGGCTGACAGAACCGCCAAGCTGTGGGACCTGAACAGCCAGCGCTGCCGCCTCACGCTGCGACGCCACACCGCCTCCGTCAACAGCGTCTGCTTCCTGCCCTCCTCCAACCTCCTCCTCACCTGTTCGGCCGACAAAAGCCTCGCCGTGTGGGACGCCAGACTGGGTGTCTGCGGCTCCACCTTCCGCCGACACCAGCACCCCTGCAACCACGCCACCTCCAGCCCGGCGGGCAACGTCCTGGCCTCCTGCGACTCCCGTGGCGTCGTCAACATGTGGGACATCAGGAAACCCGCGGCGCCAATGGCCACGGTAGACGCCGGGCCGTCGGCCGCCAACCAGGTGGCGTTCAGCCCCTCGGGGAAGATGCTGGCCGTCGCCAGCGGCGACAGTCTGGTCAGAGTGGTGGAGGTGGGTTCGCGCGCGGCGAGCAGCCTCTCAGGACACAGGGATGGCGTGCAGAGCGTGACGTTCGATCACACGGGGGAGACTGTGATGTCAGCAGGGAGTGATGGGCTGATTAACATCTGGGCGTGACATCACACGAAAGACGCAAAAACTTGGGAGTGAAACCAGCTGTTGATCTTTAAAAGGTTTTCTTGTGGTAATGGAAAAGTTCTCTCACTGCTAGTAcagatacaaaacacacacacacacactctggtcaGAAAGTCTGCGTTACAAACAAGCGGTGTTGGTTTTTTTACCAAGCAGGGAGGTTTTAACAAAAATTCGGAAAATGTAGGATCCTGTTTTTTGGAGTTTGACTCTCTGCCGATATCTTTTGTCTTTCACAAGTCTCCCAACTTTATAGAAACTACCAAACATGTCTTCTTTGGACACAATATGACACAAAACCTTCACACTTCAATGagatttgaaaaaaatcatttggtTTAGgaataataattttttattgtcgattaattgattaattgttgggtttgactccaacctg

Function

GO: NA

KEGG:

id description
K24735 SPAG16; sperm-associated antigen 16 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636762.1 lncRNA downstream 110193 3159271 ~ 3167356 (-) True LOC120545949
TU233504 lncRNA downstream 124793 3152061 ~ 3152756 (-) True G172342
TU233475 lncRNA downstream 289333 2987937 ~ 2988216 (-) True G172313
TU233474 lncRNA downstream 289943 2987209 ~ 2987606 (-) True G172312
TU233454 lncRNA downstream 404437 2872856 ~ 2873112 (-) True G172295
TU233616 lncRNA upstream 43814 3325766 ~ 3327234 (-) True G172432
TU233624 lncRNA upstream 76173 3358125 ~ 3358520 (-) True G172439
TU233628 lncRNA upstream 80795 3362747 ~ 3363219 (-) True G172443
TU233629 lncRNA upstream 81565 3363517 ~ 3370798 (-) True G172444
TU233656 lncRNA upstream 178393 3460345 ~ 3463100 (-) True G172468
XM_039780659.1 mRNA downstream 30659 3168626 ~ 3246890 (-) False mbd2
XM_039780657.1 mRNA downstream 30662 3168626 ~ 3246887 (-) True mbd2
XM_039780656.1 mRNA downstream 30662 3168627 ~ 3246887 (-) False mbd2
XM_039780658.1 mRNA downstream 30665 3168627 ~ 3246884 (-) False mbd2
XM_039780568.1 mRNA downstream 470085 2469175 ~ 2807464 (-) False dcc
XM_039780844.1 mRNA upstream 181950 3463902 ~ 3475242 (-) False june
XM_039780847.1 mRNA upstream 181950 3463902 ~ 3475166 (-) True june
XM_039780845.1 mRNA upstream 181950 3463902 ~ 3474909 (-) False june
XM_039780846.1 mRNA upstream 181950 3463902 ~ 3466763 (-) False june
XM_039778739.1 mRNA upstream 201773 3483725 ~ 3505303 (-) False LOC120544885
TU233470 other downstream 292289 2984822 ~ 2985260 (-) True G172311
TU233144 other downstream 1675393 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 2106760 1170203 ~ 1170789 (-) True G171868
TU233826 other upstream 604636 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 859901 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 1488865 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 1567996 4849948 ~ 4897357 (-) False odf2a
XR_005636625.1 other upstream 1567996 4849948 ~ 4897357 (-) False odf2a

Expression Profile