RNA id: XM_039780658.1


Basic Information

Item Value
RNA id XM_039780658.1
length 1997
RNA type mRNA
GC content 0.49
exon number 7
gene id mbd2
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 3168626 ~ 3246890 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgtgtgagtgtgttatcGCAGACGTCACAGCCTGCCGTTGgtccagttcagttcagttcaattcaGATGTACCGTTGGTTCTCCCCGCACGTAAACTGAACTAAATATACGGACCCGAAGGCAGTTCAACCCGGGAAACCATCTCACACTCTGAACCGGgatacttttaattttttactcAACCCGAAATAACCAGTCAAAACAGCCGGGGCGGAGGTTGGGAGAGCCGCCGTTAGCGTAACGTCCGTGACGTCGGTCCGccagggctgctgctgctgctgccgctccGCTGGGTTTTACTACCACGCTGTTTTTGTCTGAAGGCTCCTTATCTGTGTTTACGGAGCGGTCGGTATCGGTTACGCTCGGAGCCTAGAACCGTAGGATAGATAGAAGTTTGTCAATGATGGAGAAGAAGAGGACGGACTGTCCCGCTCTGCCGCCCGGCTGGAAGAAAGAAGAAGTGATCAGGAAGTCCGGACTGAGCGCTGGAAAGAGCGACGTCTACTACTACAGtCCTTCAGGAAAGAAGTTCAGGAGTAAGCCTCAGTTGTCCCGTTACCTTGGAAACAGTGTGGATCTGGGATGTTTCGACTTCCGGACGGGAAAGATGATGCCTGGGAAACTGCAGAAGAACAAACAGAGGCTCCGACATGACCTGCTCAGCTTGGGCAAGGGAGGTAAACCGGACCTGAACACGGCCCTGCCTATCAGACAGACAGCGTCCATCTTTAAACAGCCCGTTACCAAAGTTACCAATCACCCCGGCAACAAGGTGAAGACAGACCTGCAGAGAGCTAGTGAGCAGCCCAGACAGCTGTTTTGGGAGAGGAGGTTGAAAGGTCTGCGGTCATCAGACATCACAGAGGAAGTGCTGCGGACCATGGACCTGCCCAAAGGCCTGCAGAgTGTCGGTCCAGACTCCAGCGATGACACTCTTCTGTCGGCCATCGCCAGCGCTCTGCACATGAGCTCTGCTCCGATAACGGGACAGACGTCCGTGGCTGCCGAGAAGAACCCGGCCATCTGGCTGAATACGTCCCAGCCTCTCTGCAAGGCCTTCGCCGTCACTGACGAACACATCCGGGAGCAGGAGCTGAAAGTGTACCAGGCCAGGAGAAGTCTGGAGGAGGCGCTGATGGCTGACGGTTTGGCGCGGGCCGCCGAAAACACCAGAGAGCTGTTACAGGGGAAGACGGTTtgaagacagacagAGATCCTCTGTTCAACCAGCCTTTAGGTTTATAATCCTCTTCCTCTTAATCCAGACGACGAACCAAAAAAACCCAACAACAACAGACCACCCACAGACTGAACCTCTCCTGCACTGATCCGTTGTCTCGGTGGGCGATTGCGCCAACCGTCCCGTTAAGGAAACTGTTTTCAGGATGATACCACGCCGGACATCTCTCAGCATTTTCAAACTAAAAGGGATttagcagagcagcagcagcagcggcaatGCACAATGGGAGCAGCGACCACAGCAATACTGGcatcaagcaatgaaaaaaacaCCAGCAACACCATCGGAACCGCAACGGCAACATAGGAACAAGCAATAAGTCGGGTATCTACCAGCCCAAAGCAACAACCGAAGCCTTTAATCCTTTGGGATTCATCATCCGTATAAACTTTACAACCAGCGCTTTTCTTGTTAGGtattacttttctttctttttgataaaaaaaaagctgatgaatatgtttttttttgtttttttaatactgAAGAGCAACGCCCTCATCGAACCTAAAGTCAGAAACTGCTGGACGGCTTTTGCTAACTCTTCTTGTGCTCTTTGGTGGTTTTGGTTGTTTGTGTCAGATTGTTGTCACTTTTAAAGTCTTACGGGGTTTTAATTGAATAATAATGAGAATGTACATGCATATGAAATAGAACAATTGCTTATTTAAGACAAATTTTATACCTTGAGAGAACATACGTGTACATTTCTTGGACTGGAGTAAATAAATGACTATATTCACAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636762.1 lncRNA downstream 1271 3159271 ~ 3167356 (-) True LOC120545949
TU233504 lncRNA downstream 15871 3152061 ~ 3152756 (-) True G172342
TU233475 lncRNA downstream 180411 2987937 ~ 2988216 (-) True G172313
TU233474 lncRNA downstream 181021 2987209 ~ 2987606 (-) True G172312
TU233454 lncRNA downstream 295515 2872856 ~ 2873112 (-) True G172295
TU233616 lncRNA upstream 78882 3325766 ~ 3327234 (-) True G172432
TU233624 lncRNA upstream 111241 3358125 ~ 3358520 (-) True G172439
TU233628 lncRNA upstream 115863 3362747 ~ 3363219 (-) True G172443
TU233629 lncRNA upstream 116633 3363517 ~ 3370798 (-) True G172444
TU233656 lncRNA upstream 213461 3460345 ~ 3463100 (-) True G172468
XM_039780568.1 mRNA downstream 361163 2469175 ~ 2807464 (-) False dcc
XM_039780567.1 mRNA downstream 361163 2469175 ~ 2807464 (-) False dcc
XM_039780566.1 mRNA downstream 361163 2469175 ~ 2807464 (-) False dcc
XM_039780565.1 mRNA downstream 361163 2469175 ~ 2807464 (-) True dcc
XM_039780463.1 mRNA downstream 888816 2253897 ~ 2279811 (-) True dcp2
XM_039780653.1 mRNA upstream 30665 3277549 ~ 3281952 (-) True LOC120545955
XM_039780844.1 mRNA upstream 217018 3463902 ~ 3475242 (-) False june
XM_039780847.1 mRNA upstream 217018 3463902 ~ 3475166 (-) True june
XM_039780845.1 mRNA upstream 217018 3463902 ~ 3474909 (-) False june
XM_039780846.1 mRNA upstream 217018 3463902 ~ 3466763 (-) False june
TU233470 other downstream 183367 2984822 ~ 2985260 (-) True G172311
TU233144 other downstream 1566471 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 1997838 1170203 ~ 1170789 (-) True G171868
TU233826 other upstream 639704 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 894969 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 1523933 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 1603064 4849948 ~ 4897357 (-) False odf2a
XR_005636625.1 other upstream 1603064 4849948 ~ 4897357 (-) False odf2a

Expression Profile