RNA id: XM_039780666.1


Basic Information

Item Value
RNA id XM_039780666.1
length 2201
RNA type mRNA
GC content 0.51
exon number 14
gene id ndor1
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 3820109 ~ 3839820 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACGTGCACTGGCTTGCCGTAAAGTGTAGCGTTGATGTTTAGAATGAGGTGCTGTTTGCCTTACTTGGTGGAGTTATTTGTTAATTTTATTAGCGTCCAAGGCTATTGTTGGCGAAGTTAGCAGCGtcATTATGTCCAGGCCCACTCTGCTGGTCCTGTATGGGAGCCAAACTGGTACGGCCCAGGACACGGCCCAGAGGATTGGGCGGCAGGCGCGGAGAAGGCACCTGCAGGTTCAGGTGCTGCCTCTGGACAACTACGTCGTGGCCAACTTGATCTCCGAGCCTCTGGTTGTTTTTGTATGCGCCACCACTGGCCAAGGAGACCCTCCAGACAATATGAAGAACTTCTGGAGGTTTATCTTCAGGAAGTCTTTGCCTGTTGGCTCTCTGGGTCGCTTGGACTGTGCCATAATGGGCCTGGGGGACTCCTCCTATCCTAAGTTCAATTTTGTGGCGAAGAAGCTTCACAAGCGTCTCCTGCAGCTGGGTGCCAATATGCTGCTGCCTGTCGGGCTGGCAGATGACCAACATGACCTGGGGTCAGACGCTGTGATCGACCCGTGGCTCACATCATTTTGGGAGAAAGTGTTTGCCCTGTACCCATCTTTGGCCGCTGTGATTCCAATGAGGGAAGATGAACCGCTCCCGCCAACGTACACTTTCCACTTCCTGGATGATGTGAAAGAGAAGACCGATGACAGGCTGAGGATTCCCATGGAGCAAACTGTCCCCTCCCAGTCCCATCCCTTTCCTGCCAGACTGGTGTCCAATAGGAGAGTCACAGACATGTTGCACTTTCAGGATGTGAGGCACATCGAGTTTGATATCACTGGATCCAATGTTGAGTTTGCGGCTGGTGACGTGGTGATGATGCGTCCATGTAACTTCCCAGAGGACGTACAGCAATTCTGTCAACTGCTGAGATTAGATCCAGAGGCCAGGTTCACTCTCAGGGCCACAGACAACACTGCAGTTCCAGCCAGGCTTCCTCAGCCCTGCGCTGTGCGCCACCTGGTGGAGAGCTACCTAGACATCGCTGCTGTGCCTCGCCGCTCCTTCTTTGAGCTGCTGTCTACCTTTGCCACCAATGAGTTGGAGCGGTCAAAGCTGATCGAGTTGAGCTCAGCGGCGGGCCAGGACGAGCTGCACAGCTACTGCAACCGCCCCCGACGCACCGCGCTGGAGGTCCTGGCAGATTTCCCCCACACTACAGCAGAACTCAAAGTAGACTATCTGCTAGATCTGTTCCCTGATATCCAGCCCCGCTCATTCTCCATCGCCTCCTCTCTCCAGGCTCACCCACACAGGCTTCAGATCCTGGTAGCTGTGGTTAGTTACAAAACCAAGATGTATAAACCGCGAAGAGGCCTCTGCTCCACCTGGTTAGCCTCCCTGGACCCTGCACAAGGGGAGGTGTATGTGCCTCTGTGGGTGAAGAAGGGAACTATGAGGTTCCCTAAAGAGAAGGACACCCCTGTGATAATGGTTGGACCCGGAACAGGAGTGGCACCCTTCAGGTCGGCTTTACAAGAGAGGATCGCTGAGGGGAAAGACGCCAACGTCCTGTTCTTTGGCTGTCGCTCTGAGCGGAAAGACTTCTACCTCAGGACAGAGTGGGAGGAGATGATGAAGACCGGACACCTTAACCTCTTCACTGCCTTCTCACGAGACCAGaatttGTGAACATTGAAAAATTAAGGTGAAGATTAGTTGTTTGAAGATGTGGCAAATGGAGACCGACAGCAAGAAGACTTCCTCTCTGATCATGATGTCGGTATGAATGAATATAATTTTGGGGCGTTTCACTGACTATTTAAGGGAAACTATGGGCGTGACATAAAGCTGCCAAATctgaatatttctgtgcgtacTCCCATCCAGTGTTTCATCCGTATGCCACTTCTGACGCAAATTCGCTGCGCAGTTTTAGAAATGAAGCCCCAGGTCATGCAACTGTTTAGAAAGATGGCAAGTTTTTTTTAGGTCAGgtctatctctgttgatccaGTTTGTTTGGTTGAACTACCACGGCTGCAGCTCGTTGGTTTTGCGTGTTTGCGTTTCATGTCTGGCAACCCGggtgtcaaactgggcagttaacaactacacacaggccaaaacagaaacagacattCTGTCCCGGAATGGAAATTTCAGAAGAGAAATTAGCATTGCTATCGGAGAAGATGGTAAGCATTT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0010181 FMN binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636751.1 lncRNA downstream 44295 3776110 ~ 3777142 (-) True LOC120545877
TU233755 lncRNA downstream 76435 3744625 ~ 3745002 (-) True G172564
TU233747 lncRNA downstream 113613 3707584 ~ 3707824 (-) True G172556
TU233744 lncRNA downstream 138053 3682351 ~ 3683384 (-) True G172553
TU233740 lncRNA downstream 153257 3667928 ~ 3668180 (-) True G172549
TU233835 lncRNA upstream 132790 3972610 ~ 3976946 (-) True G172627
TU233840 lncRNA upstream 188566 4028386 ~ 4028624 (-) True G172632
TU233846 lncRNA upstream 217617 4057437 ~ 4057638 (-) True G172638
TU233986 lncRNA upstream 496269 4336089 ~ 4339898 (-) True G172743
TU233998 lncRNA upstream 561991 4401811 ~ 4402024 (-) True G172755
XM_039780782.1 mRNA downstream 135755 3683543 ~ 3685682 (-) True ier5l
XM_039779252.1 mRNA downstream 191125 3600538 ~ 3630312 (-) True crata
XM_039780821.1 mRNA downstream 238633 3552438 ~ 3582804 (-) True LOC120546063
XM_039778739.1 mRNA downstream 316134 3483725 ~ 3505303 (-) False LOC120544885
XM_039780632.1 mRNA upstream 50868 3890688 ~ 3931682 (-) True lrsam1
XM_039780633.1 mRNA upstream 51297 3891117 ~ 3931682 (-) False lrsam1
XM_039780635.1 mRNA upstream 51297 3891117 ~ 3931370 (-) False lrsam1
XM_039780634.1 mRNA upstream 51297 3891117 ~ 3930198 (-) False lrsam1
XM_039780457.1 mRNA upstream 299346 4139166 ~ 4147813 (-) True cdk9
TU233470 other downstream 836177 2984822 ~ 2985260 (-) True G172311
TU233144 other downstream 2219281 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 2650648 1170203 ~ 1170789 (-) True G171868
TU233826 other upstream 46768 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 302033 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 930997 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 1010128 4849948 ~ 4897357 (-) False odf2a
XR_005636625.1 other upstream 1010128 4849948 ~ 4897357 (-) False odf2a

Expression Profile