RNA id: XM_039780681.1


Basic Information

Item Value
RNA id XM_039780681.1
length 1341
RNA type mRNA
GC content 0.53
exon number 9
gene id tpm2
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 1887537 ~ 1943510 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATTCCATCCTCGAGCTCTCCCCGCGCCACTCAGCACGAGCGCTCCTGTCCACCTGAGTCCCTGTCACAGACctcagtctctgtctctgtctctgtctgtgtctctgtccggACTAACCGAGCCCACTCGTCCCTCCGCTGAGAAACAAGCCGACCTGAGGAAACATGGAGGCCATCAAGAAGAAGATGCAGATGCTGAAGCTGGATAAGGAGAACGCGATAGACCGGGCAGAGCAGGCGGAGGGGGACAAGAAGGGAGCAGAGGACAAATGCAAACAGctggaggaggagctgcTGGGTCTGCAGAAGAAGCTGAAAGGAGTGGAGGATGAGCTGGACAAATACTCCGAGTCGCTGAAGGATGcccaggagaagctggagcaggcGGAGAAAAAGGCGACAGATGCTGAGGCTGAGGTGGCATCTCTAAACAGGCGTATCCAGCTGGTGGAGGAGGAGTTGGACCGCGCTCAGGAGAGACTGGCGACTGCTCTGCAgaagctggaggaggctgagaaAGCTGCGGACGAGAGTGAGAGAGGGATGAAGGTCATAGAGAACAGAGCATCCAAAGACGAGGAGAAGATGGAGATCCAGGAGATGCAGCTGAAGGAGGCCAAACACATCGCTGAGGAGGCCGACCGCAAATATGAAGAGGTTGCGCGTAAACTGGTGATCCTGGAGGGTGATCTGGAGCGCTCGGAGGAGCGGGCGGAGGTGGCCGAGGCTAAATCAGGAGACCTTGAGGAAGAGTTGAAAAATGTCACCAACAACTTGAAGTCACTGGAAGCCCAGGCTGAGAAGTACTCGCAAAAGGAGGACAAATACGAAGAAGAAATCAAAGTTCTTACTGACAAACTGAAAGAGgctGAGACCCGTGCCGAGTTTGCAGAGAGGTCTGTGGCCAAGCTGGAGAAGACCATCGATGATTTGGAAGATGAAGTGTATGCTCAGAAGCTGAAGGGCAAGGCTCTCAGCGAGGAGCTGGACCTGGCCCTCAACGACATGACTACACTGTAGCCGCTCTCACTTCCTCTTTGCTTCTCCTTCCTGTCTGAGCTCTTTTCCGCCTGCTCGCTGTCGTTTTGTTCCATTCCACAGTGGTATCAGGGGCTAGAAGATTCTAAAAATGCAATGTGCTGAATCCACAAACGCTTCAGGAAGTGGTGCCTGTGTCACGCAGCACTAGTCTTTGTACAGAGGGTTGAGTTATTGCTCACCCAGTCACTGCTGTGTCTGCAGGTTCACTGAGTTAATGTCCTCTCTTTATTGAATATTCATGTAAACCCGTTTTCCCCTTCCCGCTCTGTAATAAATTTATTAAAGCTCTCTTGACTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233173 lncRNA downstream 162816 1741024 ~ 1741430 (-) True G172053
TU233110 lncRNA downstream 346471 1557544 ~ 1557775 (-) True G172000
TU233097 lncRNA downstream 407719 1494835 ~ 1496527 (-) True G171987
TU233096 lncRNA downstream 409929 1493231 ~ 1494317 (-) True G171986
TU233062 lncRNA downstream 446632 1451207 ~ 1457614 (-) False G171959
TU233243 lncRNA upstream 3136 1946644 ~ 1946905 (-) True G172111
TU233287 lncRNA upstream 139300 2082808 ~ 2083242 (-) True G172150
TU233288 lncRNA upstream 146205 2089713 ~ 2089979 (-) True G172151
TU233317 lncRNA upstream 146915 2090423 ~ 2097164 (-) True G172180
TU233382 lncRNA upstream 386177 2329685 ~ 2329970 (-) True G172231
XM_039780857.1 mRNA downstream 40258 1820764 ~ 1863988 (-) False il6st
XM_039780856.1 mRNA downstream 40258 1820764 ~ 1863988 (-) True il6st
XM_039780858.1 mRNA downstream 43385 1858046 ~ 1860861 (-) True LOC120546089
XM_039780855.1 mRNA downstream 90418 1802998 ~ 1813828 (-) True purg
XM_039780007.1 mRNA downstream 109697 1746583 ~ 1794549 (-) False slc38a9
XM_039780446.1 mRNA upstream 5395 1948903 ~ 2073106 (-) True tln1
XM_039780032.1 mRNA upstream 201859 2145367 ~ 2159051 (-) True hmgcs1
XM_039780033.1 mRNA upstream 204987 2148495 ~ 2158361 (-) False hmgcs1
XM_039780448.1 mRNA upstream 235980 2179488 ~ 2252955 (-) True LOC120545833
XM_039780463.1 mRNA upstream 310389 2253897 ~ 2279811 (-) True dcp2
TU233144 other downstream 302090 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 733457 1170203 ~ 1170789 (-) True G171868
TU233470 other upstream 1041314 2984822 ~ 2985260 (-) True G172311
TU233826 other upstream 1943080 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 2198345 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 2827309 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 2906440 4849948 ~ 4897357 (-) False odf2a

Expression Profile