RNA id: XM_039780754.1


Basic Information

Item Value
RNA id XM_039780754.1
length 4593
RNA type mRNA
GC content 0.57
exon number 9
gene id pigo
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 12162293 ~ 12173384 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgaAGGGGCTCCCGGTGCTGTCCCTGCTCCTTTGGATGTGTGCGGTGTACTTTGTGGGCATCTACCTGTTTGTGGGTGGCTTCCTGCTGGTGAGGCTGGAAGTGAACAGGACCAGCACCTGCGGAGACGTGCTGCAGCCCGGAGAGGAGCCGGTGGACTTCTGCCGCGTCCAGCCGCGTTTCCGCCGGGCTGTCCTCCTCATCATCGACGCCCTGAAGATCGATTTCGCGTGGTTCGACCCCAACAACACGGCGCCGAGACCGTACGAGAACAAGCTGCCCGTGTTGGAGGAGACGGTCTCATCCAGGCCTTCCCACAGCCGCCTGTATCCTTTCCGCGCTGACCCGCCTACGACCACCATGCAGAGGATCAAGGGCTTCACCACGGGCTCCTTGCCTACCTTCGTGGATGTAGGTAATAACTTTGCATCCAGTGCCATCCTGGAGGACAACCTCATCCACCAGTTTGGGCAAGTGGGCAAACGAGTGGTGTTCATGGGCGACGACACTTGGGAGAATCTTTTTCCGAAGAAGTTCCACCGCTCTCTGCCCTTCCCCTCTTTCAACGTGAAGGATCTGCACACCGTGGACAATGGGATCCTCCAGCACCTCTACACAACTATGGTGGGGGACGATTGGGATGTCCTGGTTGCTCACTTCCTCGGTGTGGATCACTGCGGCCACAGGTTTGGTCCCGACCACCCAGCCATGGCAGACAAGCTCACCCAGATGGATGgagtcatcagGTCTGTGATTGACCGTCTGCACAACGACACCCTCCTGGTGGTGATGGGAGATCACGGGATGACGGACACTGGAGATCACGGCGGAGAAAGTCAGAAGGAGACCGACGCTGCCATCTTCCTCTACAGCCCGTCCCCTCTGTTTCCCGGACCGCCGTCACAGAGTGAACCGGACGTGGTGCCCCAGACAGACCTGGTGCCCACCCTGGCTCTGCTGCTTGGAGTTCCCATCCCGTACAGCAGTGTGGGGCAGGTTCTCTTGCCTCTATTCCCCCCCCACGGGCAGACGGAAGGTGCAGTTGGGCGTCTCAGCCAGCTGGAGGCGCTGTGGATCAATGCAAAACAGGTTAACCGTTTCCTAGAGACTTACTCCGGCATGGCCAAAGACATCCCGCCAGAGAGCCTCTCTCAGCTGAAGCGCCAATTCTCCCGCCTCTCCTCCGAGTACCTCAGCTCGGTTAGAGAGGGTCGGTCACCCTCGCCGCAGCTGGCCGCCTCGCTGCAGGCCTACCTCACCTCCGTCCGAGACACGTGCCGAGCCACCTGGGCTCGATTCAACCCCCTCAAGATGGCGGTCGGTTTGGCCATCCTGGCGTTCGCCTGCTTGACGTGTTTCGTCCTGTCTGAGCTGTCCCCGGTGCTGATCAGGGAGAACGCTCCCGGGCTGACGGCCCCGCTCGTCGTGGCACTGGCGGCGGGGGCTTGCGCGGCTGCCTGGCAGTTGCTGGCGCGGGGCTCCGTGGAGGCGGCGTGGTGCCTGGCGGCCGCCGCCCTCAGCTCTGAACTGCTCTTTCTCTGGAGAGCCCGTCGGCGCGGCGCCGTCCCCGCGGACAAAAACGGATCCAAAGCGCCGAAGCGTGCCACCTGGCTGACCCCGTGCcgcctcctcctcatcccgccGCTCCTGGTGCCACTGCTCCGCTGTGCCTCCCTGCTCTCGGACAGCTACGTGATCGCCGAAGGCCGGGCGGTGACCTTTCTGGTCTTCTCGCTGGCTCTCTACATTCCCATCCACCTCAACTGGGATGGCCTGCTCCTGCCGCCCATCCACGACCCTCTCAAGGCCGCGGGGTTCCTGCCGCCCGCGGCCCTGTCCCCGTCGACCGTGAGGAGAGAAAGCAGCGTCCTCCTGGCCTGCTTGGGGCTCCTCGTCGGCAGCCTctacctctccctctccttccacGCCTGTCGGGAAGAGCAGGGCTCCTGCCAGCCGTCTCCGTTCCTCTCTCCCCTGTCCCGGTTGCAGGACAGCCAGCTGAAGAACCTGCACTACGTCCTCTCCGTCTTCTCCCTGGGGCTGTGGACGTACCTGCTGAGGCGCTGCCTCCGCCACTACGGCAACCTCAACTCCTCCGGCGGGACGGCGTTCACGGCCCACTGGGTCCTGCCGCTGCTGTCCGTGTGCCTGGCGCTCCACTGGGCGGTCAGCGCCACCCCGGAGGACAGCTTCAGGAACCTGGCCGAGCTGATCGGCCTGGCCCAGCTGGCCCTCCCCAGGGCCGCCTTCTGTCTCCTGGCGCTGGGGCTGTTCCTGATCTGGCTGGATCCCCTCACGGTCTTTGTCAAGACCAGGGGCGCGGCCTCGGCCAGAGCGTCGCCGCTGCCCCCGCCGAGCTACCGGGCGAGCACGGGCATCAGCCCCCAGGCCGAGCTGCACCACCTCATCCCCCAGATCTACCAGCGCATGCGGCGCTCCATGGACGACGGCGGCGAGCTGAGCGGGGCCGGCGAGGTGGACAGCAGTCCCGCCGTGAAGGCCTACGGACTGGGGACCGTCTACTCCGCCCCCTTGCTGCTGTTCTGCGGCCTGCTGGGAAttggcctgctgctgctgcacccaGAGGGCATGGCTCTGTctttcctcctgctgctgctcgaAATGGGAGCGCTGTTGCACATTCACGCTTCCTCCACTAACCTCAGTAGCCTGCACGGAACCTATTCTGGTGGCTTTGACGTGCCCTGGACTCCAGTGGTGCTGTGGTCCCTGGCGGCCACCCAGTTTTTCCACGCCACAGGTCACCTCCCCACCTTCCCGTCCATCCAGTGGGGCGCTGCCTTCGTGGGGTTCCCTGACGGACACACAGGCACCCTACTGCCCGCCTCACTGGTCACCCTCAACACTTTTGCCTCACACATCTTGTTCGCAGGTCTTTGCTTCGGTCTGCGCAGCTGCTATCCTCAGGAGACACCTAATGGTGTGGAAGGTTTTTGCACCCAAGTTAATGTTCGAGGCCTCAGGGTTCCTGGTGAGCAGCGTGTCTCTACTGATCGGGGTCACACTAGTGCTGAGAGTAGACGTGGCCGTGGGCCGCTGGTTTAAGAGACTCGTCCCGGATGCGTCTAGGTAGCGACGCCGGCGCTGCCCACCAGAGCTCAACGCGCCACAGTGAAAAGGGACATAAAAGGgactttaaagttttttttataccGACCTctcacaagaaaaaaaatgacattgccATCTGTGTCTCGCATAAGGATCCCCACAAACACGTCGTGTGAGGTTGCCACGTACTGTAACTCTCTTTGAGGGCTATGTCATGCATTACTGACATTTTCAGCCAGAGAGACTTAAGGACATCTTAGACTGACTGAACTCTTCTGGATCGCATGTGGACTCACCTAGATACCGTAATACGCTTGTAGACCACCTCACTTAGCTCATGAGGTTGAAGGCCTTTGGGAGTGGTTAGAGCAGGAGCCACAGTCTCTGAATGTCTCCTGGACTCCTGTTTTCTAACTTAATAGAATGGATGAAACATACCGAGCTCTCCAAGCCAGACAGTCCGGCAAATGGTTCACGGTGCAGCGGTCAAAGAGCTTCCCGAAATACATAACACTAAACGGTTTACACTAGCAACATGGCTGTCACAGTTGGCTACCTACAACATTTAAACCAAATTGGCCTTTAAGGAATTTTCCCCCTCCCCAACTTTGTAACCGAGGCTCACATGTATGTGAAAGTTCAGTGTTATAGAGGGGGAAATGGAACTAAAGGAGCAGGTGAATGTTTGGtcggttcagtgtcttgctgcTGAAGCCTGACTTTGGGACTCCACAGCGACAGAATGACCACTTCAACCACCAAAGCCACCCAATGTCTGGCGCTACTTCACGATCAATTTGCAAGCCAATCTACTCCGTTTTGGTGAAAAATGCATTACACCATGTCTGTCATCGCTGAAGGAACttttccatattttttttttttatgttttctattttcAAGATGTTGAAATAACCAGCGTGTCTTGTTACTGCCAATTCATAGTTTTACTGTGAacgtttttgtttgttttttcgttCGGGTTttcaatctgttcaatctgGCGCTTTTGTGATTGTAGGGTTCCGATTCCTCACTTTAATGCCTATTTATAATTTAGATTcttttaatcctttttttttttttttttttttttatctcaaattATACTTTTGTCTTAATTAGGCCAATTTCCCCCCCCTGGAATAGGTGCCTAGCTTTGACCGATGCCTTTTTTTTCGTGTATGATGTCATTATGTTGAAAGGGTCATTAAATCCAGGACCTCCAGAAACGCAGTCAGTAAATTTATTTCTGCGGGACGTCTGAGTCAGTGTTGGATGCGAGATCTGTTGATGTGATGCAGCTGTAGTCAGCAGCTGACGCTCATTAGCTAATGCACGAAGGGATGTCGACTCAGGATGAATTAGCTACAATGCAATAGTACTGCATTTCTCAGGCTGTTGTATGGGAGTGATTGGTCATTTATAGCGGCTGCTGTAGTGATTAGCCCAAGTGATGGTTTGGCTAGGTTGTGTGATGACggggcatttttttttctgtttaaataaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K05288 PIGO; GPI ethanolamine phosphate transferase 3 subunit O

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235976 lncRNA downstream 395833 11766230 ~ 11766460 (-) True G174341
TU235970 lncRNA downstream 415873 11746071 ~ 11746420 (-) True G174335
TU235962 lncRNA downstream 501431 11660525 ~ 11660862 (-) True G174327
TU235960 lncRNA downstream 502469 11659436 ~ 11659824 (-) True G174325
TU235959 lncRNA downstream 540633 11621447 ~ 11621660 (-) True G174324
TU236085 lncRNA upstream 81942 12254818 ~ 12255275 (-) True G174403
TU236114 lncRNA upstream 114538 12287414 ~ 12342288 (-) True G174430
TU236127 lncRNA upstream 236448 12409324 ~ 12416934 (-) True G174443
TU236186 lncRNA upstream 392826 12565702 ~ 12569571 (-) True G174481
TU236191 lncRNA upstream 392826 12565702 ~ 12569571 (-) False G174481
XM_039779879.1 mRNA downstream 48228 12077578 ~ 12114065 (-) True phf24
XM_039779881.1 mRNA downstream 48240 12077578 ~ 12114053 (-) False phf24
XM_039779877.1 mRNA downstream 93874 12057731 ~ 12068419 (-) False prkab1a
XM_039779878.1 mRNA downstream 93874 12057731 ~ 12068419 (-) True prkab1a
XM_039778916.1 mRNA downstream 105681 12054684 ~ 12056612 (-) True LOC120544995
XM_039780806.1 mRNA upstream 2507 12175383 ~ 12184483 (-) True LOC120546050
XM_039780330.1 mRNA upstream 139360 12312236 ~ 12318795 (-) True stbd1
XM_039779827.1 mRNA upstream 249958 12422834 ~ 12467165 (-) True musk
XM_039779828.1 mRNA upstream 249958 12422834 ~ 12455132 (-) False musk
XM_039779835.1 mRNA upstream 317375 12490251 ~ 12497952 (-) True si:busm1-57f23.1
TU235941 other downstream 997938 11161240 ~ 11164355 (-) False LOC120545042
TU235744 other downstream 2054010 10097376 ~ 10108283 (-) False gtf3c4
TU235686 other downstream 2287948 9861001 ~ 9874345 (-) False grin1a
TU235701 other downstream 2318794 9842812 ~ 9843499 (-) True G174120
TU235399 other downstream 3091085 9070162 ~ 9071208 (-) True G173900
TU236123 other upstream 184052 12356928 ~ 12357890 (-) True G174439
TU236126 other upstream 217679 12390555 ~ 12391484 (-) True G174442
TU236617 other upstream 2307586 14480462 ~ 14483417 (-) True G174799
TU236652 other upstream 2411823 14584699 ~ 14589020 (-) False G174827
TU236653 other upstream 2411823 14584699 ~ 14589020 (-) True G174827

Expression Profile