RNA id: XM_039780771.1


Basic Information

Item Value
RNA id XM_039780771.1
length 1400
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC120546028
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 8576503 ~ 8586809 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACCCAACCTGTCAGAAGGGCCCCAAACCTCTACTGTCGCCTCGCAGGAATGTTGCCTTTGAGAGGTGGCAGACGATTGGCATCTGCACAGAGATGGGTGGAGACACTGCAGAGGGAGTTAAATACTGCGATGAACACCTGAGGTCTTTAACCCGGGGTGGGAAGACCGTCTGCAGTAGCACAGGTTTTTCCAGCCAAGTATCATGGCCTTCTTCAAGAAGTTCTTCACTCATGTCATCCCTCAGAAAGACCCCGACAAGAGCATCATCCCAGTGAAGGATAAGCCCAAACCCCCCTATTACGGAACAGTCACCCCGTATCCGAAATTCGACGCCACAAGTGATGCTTCCACTCTTCAGAGCGCCATTAAAAAATTGGACAAGGATGTGATCTTTGCCATCCTGGTGAAGAGAAGCAACGAGCAGAGACAGAAGATCAAGGCCGTGTATGAAGCGTCCACTGGGCAGAGTTTGGATAAAGCTCTGCAGTCGGCTCTCCACTCACATTTGGAGGATTTGGCTCTGGCTCTGATCTCGACGCCCGCTCACTTTGATGCCTACCTGTTCAGGAAGGCCACAAAGGGTTTGGGCACCCGTGAACACATCCTGGTGGAGATTCTGGCAACAAGAACAAACCAAGAGATTCGAGACCTCAAGAGGGTCTACAAAGAAGtGTACAAAACCGAGCTGGAGGAAGTTATTAAGTTGGAGACCAGCGGTGACTTCACCGCGGCCCTTCTGGCCATGCTGAAAGCAACCAAAGATGAGAGCACGGAAGTCAACAACGATCTGGCCAAAAGGGACGCAGAGATTCTGTTTGAGGCGGGTGAGAAGATCAAAGGATCCAATGTTTCTGCCTTCATCGACATCCTGACCATGCGCAGCGCGCCGCAGCTCTGCAAAACGTTCCAGCAGTATGCTACCACCAGTGACATCACTTTACCTAAAGCCCTGCAACTGGAGCTGAAGGGAGACATTGAAGACTGTCTCATTGACATTGTGAAATGTTCCTGGAACACTTCGGCTTTCTTCGCTGAGAAGCTCCATCATGCTATGAAGGGCCTCGGCACAAATGAGAACACACTGATCCGGGTGCTGGTGAGCCGCTCTGAAGTCGACCTGAAGAAGATTGTGCAGGAATACAAGGCCATGTATGGCGTCAGCCTACAGGAGGCCATACGGAGGGACACTAAGGAACAATTTGAGAGCGCCCTGCTTGCACTGTGTGGACCAGAGTGAAATTCGGTTTTCTGAAATTCTGAAACCACTTCACTGGAATTGGAGGCCAGCTTGTCCATCGGATGCCGGTGCAGTCTCACAGCTTTCCAAATGATTACAAATGCCGTGACCAAACCTGTCTTGAGTTGATGTAATCCCACCAAGAATAAAATCTCATACTTA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235227 lncRNA downstream 28491 8538120 ~ 8548012 (-) True G173778
TU235217 lncRNA downstream 92254 8483879 ~ 8484249 (-) True G173768
TU235213 lncRNA downstream 97256 8478356 ~ 8479247 (-) True G173765
TU235209 lncRNA downstream 108123 8455764 ~ 8468380 (-) True G173761
TU235184 lncRNA downstream 137528 8433002 ~ 8438975 (-) True G173744
TU235324 lncRNA upstream 48927 8635736 ~ 8636254 (-) True G173840
TU235336 lncRNA upstream 105576 8692385 ~ 8692745 (-) True G173848
TU235361 lncRNA upstream 289872 8876681 ~ 8877345 (-) True G173865
TU235371 lncRNA upstream 312544 8899353 ~ 8903114 (-) True G173874
TU235394 lncRNA upstream 348338 8935147 ~ 8935592 (-) True G173895
XM_039780070.1 mRNA downstream 963 8558770 ~ 8575540 (-) True slc30a5
XM_039778956.1 mRNA downstream 46474 8491106 ~ 8530029 (-) True LOC120545024
XM_039780082.1 mRNA downstream 187893 8383515 ~ 8388610 (-) True LOC120545589
XM_039780614.1 mRNA downstream 373881 8098859 ~ 8202622 (-) True LOC120545930
XM_039780470.1 mRNA downstream 503161 8060447 ~ 8073342 (-) True LOC120545849
XM_039780772.1 mRNA upstream 3460 8590269 ~ 8616964 (-) True tmc2a
XM_039780312.1 mRNA upstream 38779 8625588 ~ 8634067 (-) True LOC120545754
XM_039780313.1 mRNA upstream 38779 8625588 ~ 8634035 (-) False LOC120545754
XM_039778936.1 mRNA upstream 78016 8664825 ~ 8665456 (-) True pmchl
XM_039779445.1 mRNA upstream 113150 8699959 ~ 8784342 (-) True LOC120545257
TU235162 other downstream 218476 8357723 ~ 8358027 (-) True G173727
TU234856 other downstream 1416416 7152870 ~ 7160087 (-) True G173470
XR_005636815.1 other downstream 1755637 6820812 ~ 6820866 (-) True LOC120546140
XR_005636634.1 other downstream 3175825 5396633 ~ 5400678 (-) True LOC120545230
XR_005636625.1 other downstream 3679146 4849948 ~ 4897357 (-) False odf2a
TU235313 other upstream 38673 8625482 ~ 8633899 (-) False LOC120545754
TU235399 other upstream 483353 9070162 ~ 9071208 (-) True G173900
TU235701 other upstream 1256003 9842812 ~ 9843499 (-) True G174120
TU235686 other upstream 1274192 9861001 ~ 9874345 (-) False grin1a
TU235744 other upstream 1510567 10097376 ~ 10108283 (-) False gtf3c4

Expression Profile