RNA id: XM_039780809.1


Basic Information

Item Value
RNA id XM_039780809.1
length 3247
RNA type mRNA
GC content 0.45
exon number 16
gene id LOC120546054
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18548787 ~ 18557460 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGAAACAAAACTTGGCTAACAGTTTCACACACTGTCATGATGGAAAGATCCACAGCAGTAATATTTGTCTTTCTGGTTTTATGCATCTGCAGGACATTAGGACAGACATGTGAAGGAAACTGTGGAGTAAAATTTGACTTATGTTCATGCCACTCGACATGCACGTCTCTGGAGTACTGCTGTACAGACTATAAAGAATACTGTGTGGAAGTCTTTCCATATTCCGGGTCCATTTTGGGTGGGACGGATTTTATTGTCCTTGAAGCGAGTTTCAATAAGAGTTCTGAGATCATATGCAGGTTCAACCACAATATCAATACTGTGGGGTATGTGGATGAAAACAGTAGAGGCCATTGTATCTCCCCACTATTGTATGAAACAGGATGGGTTCCCCTGCACATCTCCTCAGATAATGGCACTACATTCAGTAGAGTTGGAGCCTGGTTGTCAGTACATACTGGCAAGTTAGATGCTCAGTTTAAGGCGACTATGGTCAACTCAACAAAATGGCAGTACTATGGTACACCAGATGTTGGAGGCACTCTTGAGATGACATGGAATACCTCTTTGGTTAGCGTGGAGAGGGTCAACATAGAGCTCTGGGGATACAGCGAGACAGGAAAACCCTATTCAGACAATTGGCAGGGTGAGTGGGAATATCTGTACTCACTTGCAAAGGATCAGCCCAACAGTGGTTCCTTTAGTTTTTTGCCCAAACCAGCAGAGAACGGCTTTTCGAGTTGGGAGCTTGGCTCTCTACGCATCAGCCCCAGCACCTACCCTGATGGCATGTGGAATGTACAAGCCGCATGGACTGAGGATCACGCCCTGGCCTGGCATCTGGAGGAGAAGTTCAGGCAAAATTCAACAGTTTGGGCCCTGGAGAAATGTTTAGCATGGGACCAGCTGGAAAATCAGCTGCCCAACTTCCTCAGTGAGATCATAGACTGCCCCTGCACTCTGGCTCAAGCAAGAGCAGACACAGGGAGGTTTCATacTGACTATGGCTGTGATGTAGAGAAGGGCAGCGTGTGCACCTACCACCCTGGAAGTGTTCACTGTGTGAGGGCTATACAAGCCAGTCCAAGGTATGCAGCAGGACAACAGTGTTGCTATGACAGCACTGGTGCTCAGGTGCTGACAGCAGACTCAATTGGGGGAAGTACTCCAGACCGAGCACACGACTGGGGCTCCCCTCCATACAAGAAACCCCCTCGAGTTCCCGGACAGTCCCACTGGGTCTACGACGTCCTCAGTTTCTACTACTGCTGCCTGTGGTCTGACAACTGCCACTACTACTTCAAACACCGGCCCTCCAGTGACTGCAGGCGTTACCAGTCACCCAGCTCAGCTGTGGTGTTTGGAGATCCCCACTTCATAACATTTGATGGTGTCAGCTACTCCTTCAATGGCAAAGGGGAATATACCTTGGTGACCTCGGCAAAGAAACGTCTGACAATCCAGGGCAGAACAGAGCCAGTGAACAGAACCACGATAAAAGCAACAAAGTTGACGGCTGTAGCCATGAAAGAAACCCCCTCTGATGTTATTGAGGTGCGGCTGGTCAGCAGTCACAACGGCCTTGAAGTACTGCAGAATCAAAAAACCCTCTCCTTTTCTGAGCAGAGCTGGATGGACCTACATGgtgtgtttgtgttttccccTGCCTCTACAAATGTGACCGTGATGTTCCCCAGTGGAGCCGGGGTGGAAGTGCGACTGAGAGAGGGAACTATGACAACCACCGTGCTCCTGCCAGAGGAGTTCAAAGACTCCACTCTCGGACTGTTGGGAAAGATGAACGGTGACGCCAAAGACGACCTCACCCTCAGCAACGGCCAACTTGTGCTGAACCTCACCAATCCAGAGGAGGTGTTCAGCTTTGGGGCAAGCTGGGCCATCTCCAACAACTCTGCCTTGTTCACATATGATTCAAACTATCTTTTGGACACATATTACTATGTTCCCAGACATGACCATACTTTTGTTCCAGTGTTTTCTGTCCCCGAAAGTCCAGATGATCCATTAGCCAATCAAGCATCCGAGATATGCTCTGGAGAGGGTTCTCAGTTTTGTAGGTATGATATCCTGGTAGGTCGTAGTCCAAGCATGGGAAATGCTACCAAAGTGTCTTTCCAGAGTCACATTTCTCTTGTGGAGGATCTAAAGCGAGTGATATCCTGTGGATGGCTTTCACCACCAAAAAACGGGAAGAAGGAGGGGACCACATATGTACAAGGAGCTAAGGTGCAGCTTTCCTGCGATGACGGCTACACACTCAAAGGATCAGCAGAGCGCATATGCCAGGAGAATGGCCAGTGGACTGGAGATGACTCAAACTGCGTGGTTACCAGTAATGTTGCAGGAATAGTGGCCGGTTCAATCATTGGAGCTGTAGCACTGATTGTGATTATAACAACAATCATACTCCACTCCAGGAAACAGAAAAGaaaagaTGCACATTCAGAAGAAGCTGTGACAAGTGAGGCCCTCTAACCACAACTTTTCATCtactgaaaaatgaaaaacttaaaaatgaaTGCATGCATCAATACGTGCTTACGAAAGATAAAGACACGCATAATATAAAAGAAACATCTTACTTTGGTCATAAACCTTTTAAACCACAGCCATGATCCAGACTAACATGTATTATAAGGTTGAGCAAAGGTCACAGTTAAAGAGTAACTACACACTCCATCTTTTACACACTACATCTTCCATGGCAGAAAAGTATTGTTGCACTGACTTCTATACGAGGAAATTTTAACCTGTGTTGCACTTTTGACCGCACCCACCATAACCACAAAACATCCTGGGCTAAAAACTACAGGTTTAGGTTTAttgaaaaagtgaaaacacTTTGTTATGGAAGGCTTGTGGGTTCATCTACTTCACAGTCAGTCATTAAGTTGGATGATGTCAAATGTAGCTATGTAAAAATGATCACTCAATAACTTACCGTAAGTCATATTTTAAGCTAACAATAATTGATAAAACAATGTCAAAAGTGAAACATTAATGATCCAACCTGCAACTGTCTGAACACTCCATTAATGTTAATGTCATACATCATCAAGTGTTTGGGCTACAGAAGATCTTTGGTCAGCACTTCAGATCAGCTGTATACAGACTATCTCACTGATGTGTACTTATTGTTTGTGTACTGTCATCAAATGCTGATGAATATTGTTATACAGTTTACTATTTTCAAATttggtggacaataaagtttttcTAATACAG

Function

GO: NA

KEGG:

id description
K23820 SUSD2; sushi domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237986 lncRNA upstream 82723 18464270 ~ 18466064 (+) True G175804
TU237970 lncRNA upstream 97719 18449802 ~ 18451068 (+) False G175797
TU237971 lncRNA upstream 97719 18449802 ~ 18451068 (+) True G175797
TU237965 lncRNA upstream 117090 18429684 ~ 18431697 (+) True G175792
TU237938 lncRNA upstream 126641 18421529 ~ 18422146 (+) False G175772
TU238090 lncRNA downstream 30299 18587759 ~ 18588293 (+) True G175891
TU238114 lncRNA downstream 93056 18650516 ~ 18651030 (+) False cabp7b
TU238116 lncRNA downstream 99064 18656524 ~ 18657617 (+) False LOC120545610
TU238115 lncRNA downstream 99504 18656964 ~ 18657617 (+) False LOC120545610
TU238118 lncRNA downstream 100230 18657690 ~ 18658284 (+) True G175917
XM_039778801.1 mRNA upstream 646 18536631 ~ 18548141 (+) False myo1hb
XM_039778802.1 mRNA upstream 646 18536631 ~ 18548141 (+) False myo1hb
XM_039780813.1 mRNA upstream 74748 18471247 ~ 18474039 (+) True LOC120546057
XM_039780187.1 mRNA upstream 87015 18458512 ~ 18461772 (+) False LOC120545648
XM_039780188.1 mRNA upstream 87015 18458951 ~ 18461772 (+) True LOC120545648
XM_039780811.1 mRNA downstream 1100 18558560 ~ 18560433 (+) True LOC120546055
XM_039780863.1 mRNA downstream 4980 18562440 ~ 18571048 (+) True taok3b
XM_039780865.1 mRNA downstream 4980 18562440 ~ 18571048 (+) False taok3b
XM_039780864.1 mRNA downstream 4980 18562440 ~ 18571048 (+) False taok3b
XM_039780866.1 mRNA downstream 4980 18562440 ~ 18571048 (+) False taok3b
XR_005636603.1 other upstream 646 18536631 ~ 18548141 (+) True myo1hb
TU237776 other upstream 471285 18075032 ~ 18077502 (+) False LOC120545364
TU237773 other upstream 471285 18076239 ~ 18077502 (+) False LOC120545364
TU237777 other upstream 471285 18076239 ~ 18077502 (+) False LOC120545364
TU237740 other upstream 475726 18067132 ~ 18073061 (+) False G175640
TU238138 other downstream 118584 18676044 ~ 18686728 (+) False srsf9
TU238143 other downstream 118584 18676044 ~ 18723785 (+) True srsf9
TU238154 other downstream 118584 18676044 ~ 18686728 (+) False srsf9
TU238450 other downstream 822817 19380277 ~ 19387442 (+) False LOC120545529
unassigned_transcript_963 other downstream 959775 19517235 ~ 19517306 (+) True trnac-gca_32

Expression Profile