RNA id: XM_039780816.1


Basic Information

Item Value
RNA id XM_039780816.1
length 1821
RNA type mRNA
GC content 0.50
exon number 11
gene id gtf3c5
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 9972694 ~ 9984025 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGCGTTATTTtgcacttgcacacacacactcacgctgTTGTACAGGAGCGGGTCTTCTTATGTAGCTAGTGTCAGTGTTATGCCAGCGTGAATATCCCAATTAAAACAGACACTATGGCGGATTTAAGGGAGTGTAAGATGGATTTTACTCTGAAAGAACTGACTCTTTCATGTCAGACTGAAGACGCAGATATTCCCGGCAGCTCGTCCAGCGTGGAGCTGAAGGACAAGAAACTGGTGTGTGTGGAGTATCCGGCGTTGGTTACCAGTGTGGACAAGATGCTGGAGACTCTCGGAGGGGAAAAGGCTGTGTCTAAATCCTTCGCTCACCCCAACAGGCGTCTTGAGCTACGCTTCCGACCTAAGGACCCTTTCTGTCACCCTCTGTGTGGAAACCGCTTCCCATCAAGCAACCTCGTACTCAGAGTGCGGCGACGGGTGCGTAAAAAGGACCCCAAGGACGCCGAGATCCACATGGATATACTTGGAGTAATAGGAACGACATACAAATTCCAAGGGATGGCAGACTTTCAGTGCCTAGCTGTGCACTCAGAAGGAGGAAAAGACACTTCTTTGTACGACAAAATCATCCTCCGCAAATCAGAGAACCAAGAGTTCTTTGAGAAGCCCGTGCCCCTCTTTCTTCCCCCTGCCATCTTCTCACGCCTCGACTGTCCTGTGGATTATTATTACCGGCCTGACGTCTATCAAAAGTCACACCAGGAATTCGGTAACAACAGGAACTTTATTGGTTTGAATCGAGCTCGACGGCCCCACAACGCCATTTTTGTCAGCTTCACTGAGCCCACTGTGCCCACTGAGTGCCTGGAGGCAGCCAAGGAAAACTGGGCACGAATCTCCGTGAAGGAGAGTGACAGGCAGGCTGAAGAACAACTGAGAAAAATGTTTGAGAGCCGGCCCATCTGGTCCCGGAACGCCGTCAAGGCCAACATCAACATCCACCCTGATAAACTCAAACTGCTGCTGCCTGTCTTCGCCTACTACATGGTGACAGGGCCGTGGAGAAGTCTGTGGGTGAAGCTGGGCTATGACCCCCGAAAGAGAACCGACTCCAAGCAATACCAGCTGCTGGACTTCAGGATCCGCTGTAGCACCAAGCACGGGTATTCTATATCTGACATGCCGGTCAAAGCCAAGAGGAGTGCCCTTAACTACAGTCTGCCTATCACATTTAACAAATCTGGTCCCCAGGCAGCAAGTGTGATGGAACTTCCAGCTCAGGAGGGTCCAAGCATCAGTCGAGATCCCGTCCCAGTCTCTTACCAGCTGAAGGAGGCATCCTACATATTCAGAGAAGGCATGCTGCCTCCTCACAGACAGATGTTTTACCAGCTCTGTGATTTGGATGTGGAAAGTATCAAAAAGGTGATTGAGCAGAAGGGCGATGAGCAGGTGTGTGACGAGCGGGACGGCTGGTGTCGCCTCGGGACCACCGACCACCTGAGGGACATGATCTCTGCCATGATCAAGAAGCTCATCCGAGCCCAGAAACCAGcattgccagacctcccGAAGAAGCGCCGACGCGCTACCCCAATTTCCAAATACCCAGGGAGAGATTCGGATTCAGATGAAGAGGTGCAGGACGACGACAAggatgatgatgaagaagaagatgaagacgaGGAGTTCCTGCCGTCGGAGGGCAGTGAAAACGAGATGGAGACAGAAATTCTGGATTACATGTAGCAAAACATAACCACTTTGATGACATTAATCTCGACTGTTAATATCTTACGTAATTCTGTTAAAAAAGACATGTTTGAAGGATGTAAATAAACATGGCAATATTTCTAGTG

Function

GO: NA

KEGG:

id description
K15202 GTF3C5, TFC1; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235681 lncRNA downstream 69687 9861001 ~ 9903007 (-) False grin1a
TU235693 lncRNA downstream 175723 9795843 ~ 9796971 (-) True G174116
TU235695 lncRNA downstream 175723 9795843 ~ 9796971 (-) False G174116
XR_005636702.1 lncRNA downstream 634276 9337767 ~ 9338418 (-) True LOC120545476
TU235467 lncRNA downstream 674216 9297725 ~ 9298478 (-) True G173944
TU235726 lncRNA upstream 60607 10044632 ~ 10045354 (-) True G174139
TU235734 lncRNA upstream 104257 10088282 ~ 10088523 (-) True G174143
TU235759 lncRNA upstream 211051 10195076 ~ 10283957 (-) True G174166
TU235763 lncRNA upstream 252720 10236745 ~ 10239274 (-) True G174168
TU235760 lncRNA upstream 259702 10243727 ~ 10284037 (-) False G174166
XM_039778921.1 mRNA downstream 844 9966088 ~ 9971850 (-) True LOC120544999
XM_039778920.1 mRNA downstream 1459 9966088 ~ 9971235 (-) False LOC120544999
XM_039778925.1 mRNA downstream 9078 9958707 ~ 9963616 (-) True LOC120545003
XM_039778918.1 mRNA downstream 17957 9950160 ~ 9954737 (-) True LOC120544997
XM_039778917.1 mRNA downstream 23897 9942713 ~ 9948797 (-) True LOC120544996
XM_039778853.1 mRNA upstream 9573 9993598 ~ 9999567 (-) True gfi1b
XM_039779363.1 mRNA upstream 113226 10097251 ~ 10108289 (-) True gtf3c4
XM_039779364.1 mRNA upstream 159045 10143070 ~ 10150003 (-) True barhl1b
XM_039779917.1 mRNA upstream 217041 10201066 ~ 10226381 (-) False gsna
XM_039779918.1 mRNA upstream 217041 10201066 ~ 10226379 (-) True gsna
TU235686 other downstream 98349 9861001 ~ 9874345 (-) False grin1a
TU235701 other downstream 129195 9842812 ~ 9843499 (-) True G174120
TU235399 other downstream 901486 9070162 ~ 9071208 (-) True G173900
TU235313 other downstream 1338795 8625482 ~ 8633899 (-) False LOC120545754
TU235162 other downstream 1614667 8357723 ~ 8358027 (-) True G173727
TU235744 other upstream 113351 10097376 ~ 10108283 (-) False gtf3c4
TU235941 other upstream 1177215 11161240 ~ 11164355 (-) False LOC120545042
TU236123 other upstream 2372903 12356928 ~ 12357890 (-) True G174439
TU236126 other upstream 2406530 12390555 ~ 12391484 (-) True G174442
TU236617 other upstream 4496437 14480462 ~ 14483417 (-) True G174799

Expression Profile