RNA id: XM_039780833.1



Basic Information


Item Value
RNA id XM_039780833.1
length 2671
RNA type mRNA
GC content 0.47
exon number 10
gene id nek6
representative True

Chromosome Information


Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 533379 ~ 564782 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


tgtgtgtgtctgtgggggaGTTGCACAACAGCAGCAGGAGGGACCAGTCCTGTGTGAAGGGTTTGCAGTGAGCAGCAGGACAGAACTGACTCCTCTAAGGAGGGTGGGTGGGATGCTACAATGGAGGCTCAGAACATCAAGCAGCCCGCCTTGGACAACCACAACAATCTGTACAAAACCCCTGGTCAGGAGGAACAGAGAAGCGTGCCCAGCTGTAAGTACTGCTGCACTCTGGCCAACCTGCGGATTGAGAAGAAGATCGGCCGGGGCCAGTTCAGTGAGGTGTACAAAGCCACGTACCTGCTGGAGGGACAGCTGGTCGCACTCAAGAAAGTCCAGATCTTTGAGATGATGGATGCCAAGGCTCGCCGGGACTGCATCAAAGAGATAGATCTACTAAAGCAGCTCAATCACCCCAACGTGATTAAATACCTCGACTCCTTCATCGAAGACAACGAGCTCAACATCGTTCTGGAGCTGGCAGACGCTGGAGATCTGTCACAGATGATAAAGTACTTCAAGAAGAAGAGGCGCCTGATCCCAGAGAGGACCATATGGAAATACTTTGTGCAGCTGTGCAGCGCCCTGGAGCACATGCACTCACGCAGAGTCATGCACCGAGATATCAAGCCAGCCAACGTGTTCATAACAGCCACAGGCGAGGTGAAGCTGGGGGACCTGGGATTAGGCCGCTTCTTCAGCTCCAAAACCACTGCAGCACACTCTTTAGTGGGGACGCCGTACTACATGTCACCAGAGAGGATCAATGCCAACGGATACAATTTTAAGTCTGACATCTGGTCCCTGGGATGTCTTCTGTACGAGATGGCGGCGCTGCAGAGTCCCTTTTATGGGGACAAGATGAATCTGCTGTCCCTCTGCCAGAAGATTGAGCAGTGTGATTACCCCCCCCTCCCAGCTGACCATTACTCTGACAAGCTGCGGGGCCTGGTAAGTATGTGCATCAAGCCAGAGCCAGACCAGCGGCCGGACATCGTTTTCGTGCTGCAGATCGCCAAACAGATGCATACGTGGACGTCCAGCACCTGAGCGCCATTTCTGCTCCACGCTTCCCGTCTGCTCAGTCTGAGCTTGGCTCAGCTTGCACAAAACGCTTTGCCTTTCCCTCCTCTGGACAGGAGGAAGTCCTGGAAAGACATGCACTCCCACTTATTTTCTGTCTTGGAGGATGAAGAGTTGTGTTAATGCTGTAGCTCTCGGGGAAAGTGGAGCTCAATGTTTTTTGAGCTGAGGACAGACAGCTGTGACTCACTCTGACCACAGATCCTCTCTGCTGATTCATTCCACACTCCGGCTCTGGGTCTGTGGGTCAGCTGAGATTGAGAATCTGAATATCTATCATCTATTATTCTAATCaaaatttttcttttacattgtCAATTTAAGTCCATCGAGTAGagaattgtattgtattgtagaAATGTATTAGCGATTACTAAGTGAGAATGCAGCTTTGCCTCACTGTCAGCTTGCAGGGGAGATCAGCCCAACAACCTGATGTGAATACATATGTATTTATTGATTAATTTCTATCTATCAGAGTAAGGTCTTCTGTGTGGAAGCCAGGGGGGCTGTGGTGGTGTCAGGGCTGTGCAGGTTTGGACCAACAGGCAGAGACTGCAACAGGCAGGATCCAGCAGCTAAAGATTAAACTAGTCTTCTCCATGACTAGACAGCTGATACAGGCTGACCGTGAGGAGCAACACAGGGCACAGTGGCAAACAAACCGACGTACAACTCAAAGAACCAATCAGCAGCAGCAATAAGAAGAGAAACACTGATTGGGTAACGAGACGACACAAACGCAGGCTGACGAGGCTCGACACCAAACAGGTGGAcaagggaagacatgcagggcGGAGCTACAGGGACACAGAATGGACAGACAGGGCCAGCACAGAAAACTGAAACACAATGACCACAACGCGGAACATCCTAGAGACTTCACTCTCTCATCATTTCATTATCTTCAGGTTGTAAAGCTCTTTACGTAGCTTTTGCCAAAACAGACTATCAATGGACTTAATAGTCTTGATTCAAGGTCCACTCACAACCGTTTTCCAGAGCTTTCAGCCAAATGTCTTGGTCTTCTTTTGAGAAGGACTTGTCTTTGTCTCATTGTGAAGTCGTTGTCCTTGCTCCCGAATGGAAGACTCCCAAACTGGGCCAACCTTTTGACTCTTAGCTCACTATATTTTGAATTTGTTACGATTTTTATGTCACCTAAATACTTTAGGATAGTGGATGTAAGAAGGAAAACATCATAAACCATTTTTTTGTAAGTCATCATTAAACGGCCCAGTATTGATTGCAGTTCCTGattctgtgtttctgtgagaTCACGTCGACCTTTGTTACTGTCAAACTTTGAGAGAGATAAGATGCTGTAAGAGTCAATGTTATAATACAAGATATGAAACAAGAATATGTTTTAAGATGTCAGCAGCTCATAATGGACCGTGCCTCATCATACAGAACAGCTGAACATTATTTTTGACAGCTTGTATTCTATGCCGATATAATACATGTTTTCTATATCCAGGAGGGGAGAGGTTTCGTCATGTCCAGTTTGTTCATCTTCCTACTGTGCAGTCGATTTGTGCCATTATGTTTGTTCCAACATGACATTAAATGTAGCTCTGTGAAGTCA

Function


GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K20875 NEK6; NIMA (never in mitosis gene a)-related kinase 6

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU232700 lncRNA downstream 14309 518840 ~ 519070 (-) True G171680
TU232694 lncRNA downstream 53228 479794 ~ 480151 (-) True G171674
TU232649 lncRNA downstream 238094 295066 ~ 295285 (-) True G171636
TU232606 lncRNA downstream 461581 71037 ~ 71798 (-) False LOC120546083
XR_005636784.1 lncRNA downstream 461588 71010 ~ 71791 (-) True LOC120546083
TU232744 lncRNA upstream 2237 567019 ~ 567342 (-) True G171718
TU232745 lncRNA upstream 5519 570301 ~ 570904 (-) True G171719
TU232754 lncRNA upstream 34764 599546 ~ 600048 (-) True G171728
TU232770 lncRNA upstream 107690 672472 ~ 684728 (-) False LOC120545599
TU232771 lncRNA upstream 107690 672472 ~ 745412 (-) True LOC120545599
XM_039780443.1 mRNA downstream 74103 458084 ~ 459276 (-) True LOC120545827
XM_039780464.1 mRNA downstream 191002 302496 ~ 342377 (-) False mapkap1
XM_039780465.1 mRNA downstream 191002 302496 ~ 342377 (-) True mapkap1
XM_039780466.1 mRNA downstream 191003 302496 ~ 342376 (-) False mapkap1
XM_039780851.1 mRNA downstream 348596 144208 ~ 184783 (-) True LOC120546082
XM_039779351.1 mRNA upstream 31111 595893 ~ 621737 (-) False LOC120545215
XM_039779353.1 mRNA upstream 31111 595893 ~ 605140 (-) True LOC120545215
XM_039780127.1 mRNA upstream 60178 624960 ~ 659720 (-) True crb2a
XM_039780105.1 mRNA upstream 187630 752412 ~ 846555 (-) True slc12a2
XM_039780106.1 mRNA upstream 189119 753901 ~ 846977 (-) False slc12a2
TU232928 other upstream 605421 1170203 ~ 1170789 (-) True G171868
TU233144 other upstream 1031734 1596516 ~ 1602156 (-) True G172032
TU233470 other upstream 2420040 2984822 ~ 2985260 (-) True G172311
TU233826 other upstream 3321806 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 3577071 4141853 ~ 4147755 (-) False cdk9

Expression Profile