RNA id: XM_039780836.1


Basic Information

Item Value
RNA id XM_039780836.1
length 2323
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC120546073
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 4465940 ~ 4471158 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGTGTAGGCGGTTGGGTACAGCCCCACTTTTCAACTGCTAATAAAAGACTGCAAGTATCACTGGTAAACAGAGGACCAGCCAACTTTGCAGATACCGGACTTGCTGACATGGAAGAGAAACTTTTTGGGCAGACTCTGCCAACTGAATCTGCCTGTGGGGATGCAATTATAGATATGGACCCGGACAAGTCTGTGCTCATCCCCATCAAACACTGCCGGGACATgaagcaacaggaaatgcgccccAGACTCATCACTCTGCTCTTGCTGCTCAGCAGTATGGCACTGTTCATTTTTACCATCTGTGCTGTTTTATGGCAACGTGGAAACTCTGGATCCAGCGGACAAAACTGCGCAGTAAAGCCAAGTCCAGCCTATTCCAAGCAAGAGAGCGTTTACCCTACAGCTAATCCTCAAACAAACATCCCAAAACTGCACGTTGATCTcaCGTCTGTACCTGCAGACAACAAGACTGATGGACTATACTTGAAATGGCGTGATAATTTTGGTGGACAACACATCAAAGAGGAAACTGCCATTGTGATTCCTGAGGACGGTTTCTATTATGTCTATGTGAGGATTGAATTAAGCTGCAATAAGGGAGACTTCAACAGGTTCTACGCAGAGCTGCGCAACTGGAGTGAAAGTTACCCCGAGGCTAGACCCACGATGAAGGCCTGGGATGGATGCACTTCAGAAGGGGATAAGAGTGTGTTCATGGGACAGCTTTTTGAGTTGTCTAAAGGAGATAATTTGAGAGTGTGGATCGAACTGGGCTATGAACTGATCTCCACATCATCATTTGGTGCGTTTCTCACATAGAGAATATGCCTCCAGTGTCTCAGTCTCAATAATctatttttaaagtattttttcatttaaaaacaaattcataCTTTTTGTTCAAAAAACCCTCATTCTGCCCAAGGCAGCACCTTGGAGTGCCTGTCTTTTTAAGCCCCCTCTTCTGAAAAAGCCCAATCTGCTCCGATTGGTCAGCAGTTGCGGGTCTTCCTCATCTATGCTCTCCTCGTCTGTGTCTGGTCCATCAATACTGCCAGGGGAATGACTGACTACATTTACTTGCACATAATATTGtagttttttgcccttattccgaaaaagacgatattccgactaagctgtttacatggctaacgAATGTGaaaattccactaatattcccgtttacatggaGCCTTTCAAAATACGATTTTGTCAGAGTTTACCAGCGGTgacggacttgttggaccgtgtgaacacagcctcgccctctttcattcctacaaacagcttcttgaaaaggtcggcgtagcGATGTTTGTGCTTATCTATAATAATGTGTctgtctttgataatgtttaaaagtagttagtgtttctccttcttatcgggtctgcagtcTTAAgggctggttggtttgtttacagcaaccatagcaagttttttttttttattagctagcagtatttataataaaaattatTGCTAACAACTGTCAATTTGTCAGTTCACTCAAATTACAAATACATTATTTACCCACTTACCCCAGTGGTATGTTTTagagttttgtttttattagattgttttttaaacaaaagaagatTTTACTGCCCCCTcccaatagagctcaacagtgaccgcccacttttttaACGGCTCTGGTTCCAGATGTGTTTTTCCCCATTCAATTGTTTCATAGTTTTGAATATtgcttatataaagagttttaagtctggaaccaagccaaccagctacgagatgaatagtgagcataaaacatttgattcggcgcaaaaaacattttgaaaaaatggCGAAAAGGGAAAGGTAAGAAGACTAGCCGCTCGCGGTTTCGCGGGTACGGTAAACGTTCCTATGGTAACAGtgagttggaccaatcagagatgtTGTTGTTacacttaggattgtgggtactGTAGCTTTTCTCCATAAGATCGCAGataagacatgtttttcttaaaacaaggttgatttcatacgaacttctagcttctacaggagcagaaacttccGTTTCACAACCACGTAGTTCGTGGTCAGTCTACcacggatggtttagacattacggctgataatctaaatccttatggagaaaatcaatgggATTTTTACTTCTGGAACCAAACTGTTCAGCTCTATACAACAGGGATGATTAGAATTTAATTTGATGTGTTCAGCATGGAAACTGACATATTAGAAATTCTCTAAATAATTCACATACCTTTTTGTCAACAGTTATCAGGGAAAACTATTCTCTGTCAATGTGCTGGGGCATTGCCTCAGGAAAGACATATTTa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234017 lncRNA downstream 105 4464827 ~ 4465835 (-) True G172768
TU233998 lncRNA downstream 63916 4401811 ~ 4402024 (-) True G172755
TU233986 lncRNA downstream 126042 4336089 ~ 4339898 (-) True G172743
TU233846 lncRNA downstream 408302 4057437 ~ 4057638 (-) True G172638
TU233840 lncRNA downstream 437316 4028386 ~ 4028624 (-) True G172632
TU234026 lncRNA upstream 3081 4474239 ~ 4474861 (-) True G172777
TU234038 lncRNA upstream 37081 4508239 ~ 4509083 (-) True G172787
TU234039 lncRNA upstream 37179 4508337 ~ 4509083 (-) False G172787
TU234080 lncRNA upstream 81713 4552871 ~ 4559694 (-) True dpm2
TU234188 lncRNA upstream 282008 4753166 ~ 4753459 (-) True G172914
XM_039780051.1 mRNA downstream 108686 4340194 ~ 4357254 (-) True tbc1d13
XM_039780050.1 mRNA downstream 133785 4307976 ~ 4332155 (-) False thnsl2
XM_039780048.1 mRNA downstream 135008 4307976 ~ 4330932 (-) False thnsl2
XM_039780049.1 mRNA downstream 135171 4307976 ~ 4330769 (-) True thnsl2
XM_039780383.1 mRNA downstream 159456 4270984 ~ 4306484 (-) True dqx1
XM_039778751.1 mRNA upstream 39952 4511110 ~ 4542790 (-) True pip5kl1
XM_039780759.1 mRNA upstream 82088 4553246 ~ 4559768 (-) False dpm2
XM_039780729.1 mRNA upstream 92199 4563357 ~ 4599232 (-) True fam102ab
XM_039778827.1 mRNA upstream 136566 4607724 ~ 4612536 (-) True naif1
XM_039779799.1 mRNA upstream 206748 4677906 ~ 4732313 (-) True pkn3
TU233934 other downstream 318185 4141853 ~ 4147755 (-) False cdk9
TU233826 other downstream 522109 3886588 ~ 3943831 (-) True G172620
TU233470 other downstream 1480680 2984822 ~ 2985260 (-) True G172311
TU233144 other downstream 2863784 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 3295151 1170203 ~ 1170789 (-) True G171868
TU234194 other upstream 299659 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 378790 4849948 ~ 4897357 (-) False odf2a
XR_005636625.1 other upstream 378790 4849948 ~ 4897357 (-) False odf2a
XR_005636634.1 other upstream 925475 5396633 ~ 5400678 (-) True LOC120545230
XR_005636815.1 other upstream 2349654 6820812 ~ 6820866 (-) True LOC120546140

Expression Profile