RNA id: XM_039780837.1


Basic Information

Item Value
RNA id XM_039780837.1
length 1804
RNA type mRNA
GC content 0.53
exon number 7
gene id zgc:92275
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 9923206 ~ 9938950 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTGCTAACCCTAGGTGGGGCTTAAACAAAAGTGGGATGATCTCGTCTCCAAAGCGCTTACATATCGATGACACATGTCAAATCCTCTGGAAGCTCATGGTAAACTAGCCGAGAGAGACAGGGACACCACAGAGCCGCACCGGGCACAGGATATCAAAGCATGTCCACTTGGAAGGTGGCTGTAATTATTGGGCTGGGAGTAGGTGCAATGCTTATCATGCAAAGCGGAGACCTGCTGGACTCGGTAGGCAACGGGTACCCTATATGGAGGGAAACGGGGCTGCTCGCGCGGGCTGTGGTCTGCATCATCGCCGTGTTTTCCCTCCTCGCCATTGGCTGGCTGCACGGGCTGCTCTTCAGTCCCCTGGAGCTGCTTAGGGGGCCCGACGATGTGGGATACATCGCCGAGGACGGTCGCTCCAGAGCCCAGGCGGCGAACGAGGTCCGCCGCAGGAGGAAAACCGGAGAGCTGCCTCCGGTCTATCCGAACGGCTGGTACCGAGTGCTGGACTCACACATGCTGAAGAGGGCCGAGGTCAAAAGTGCATCTGTTCTAGGTGAGCAGGTGGCAGTGTTTCGGGACCAGGATGGGAAAGCCTACGTGGTAGATGCCTACTGCCCTCACCTGGGTGCCAATCTGGCTGTGGGAGGACGGGTGGTGGGAAGCTGCATAGAGTGCCCATTTCATGGATGGCAGTTTCGGGGGAATGATGGCAAGTGTGTGAGGATCCCTTATGCAGATAAAGTGCCAGAGTTCGCCAAGGTGCGCTGCTGGCCCAGCTGTGAGGTCAACAGGCAGATCCTGGTTTGGTTTCACTGTGATAAAGAAGATCCTCAGTGGAGCGTTCCAGAGCAGCAGGAAATTACAAAGGGCGAGTGGGTCTATCGGGGCAGAACGGAACATTTTATCAACGCTCACATAGAGGAGATCCCTGAAAATGCAGCAGACATCGCCCACCTCGCCCACCTTCACACACCGGGCATTTTAAGTGGAGTAGATCTGCGCTACACCTACAGCAAAACCTGGGAGTTTGTGCGGCATGACTGGAAGGTTCAATGGGAACCAGAGCCAGAGCCCAACAAACATTGTTCTCAGATGTTGGTGAAACATGCGCTGACTGTGTTTGGATGCCACTGGTCTCTGCTGGACATTTGTGTCGTGGCAAGACAGgtgggTCCAGGAGTGGTGTTCCTGCAGTTTGAACACAGTTTCTTGGGCCGGGGTGTTATCTTGCACTGTGTGACTCCAGTGGAGCCTCTGTTGCAGTGTGTCTCCCACACCATCTACTATCAGTCTAACATCCCACCTCTGGTGCCCAAATTCATCCTCAAAGCAGAGTGCATTCAGTTTGAGCGCGATGTGATGATCTGGAACAATAAGAAGTACATCTCCAAGCCTCTCCTCGTGAAGGAAGACTCAGCCATCCAGAAGCACAGGCGCTGGTACAGTCAGTTCTACAGCGAGAACAGCCCGCGGCTGCAATACCAGCGTGACACTTTGGACTTCTGACCTCCCTGAACTAAAAGTGGAGAGATCAGCAGAGAAGATGTCAGGTCAGGGTTGACATTAATCAGAAGTGTCAGAGGAGGGGAGTCCACAATTGATTTTCTTCTGtcacatatacagtaataaattaaaggaggaaaaggagaCCTGATTTGTTTGTTGGGATGGGGCTCTTTTAAAAGCCTGAAACTTATGTTAAACCGTATAACCGTCTCTTcttcttcgtccgcttatccggggtcgggcTGCGttgggcagcagctccagcggGGGACctcccaaacttccctttcccga

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG:

id description
K14938 NVD, DAF36; cholesterol 7-desaturase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235681 lncRNA downstream 20199 9861001 ~ 9903007 (-) False grin1a
TU235693 lncRNA downstream 126235 9795843 ~ 9796971 (-) True G174116
TU235695 lncRNA downstream 126235 9795843 ~ 9796971 (-) False G174116
XR_005636702.1 lncRNA downstream 584788 9337767 ~ 9338418 (-) True LOC120545476
TU235467 lncRNA downstream 624728 9297725 ~ 9298478 (-) True G173944
TU235726 lncRNA upstream 105682 10044632 ~ 10045354 (-) True G174139
TU235734 lncRNA upstream 149332 10088282 ~ 10088523 (-) True G174143
TU235759 lncRNA upstream 256126 10195076 ~ 10283957 (-) True G174166
TU235763 lncRNA upstream 297795 10236745 ~ 10239274 (-) True G174168
TU235760 lncRNA upstream 304777 10243727 ~ 10284037 (-) False G174166
XM_039780419.1 mRNA downstream 20734 9861002 ~ 9902472 (-) True grin1a
XM_039780412.1 mRNA downstream 20735 9861002 ~ 9902471 (-) False grin1a
XM_039780410.1 mRNA downstream 20735 9861002 ~ 9902471 (-) False grin1a
XM_039780409.1 mRNA downstream 20735 9861002 ~ 9902471 (-) False grin1a
XM_039780411.1 mRNA downstream 20736 9861002 ~ 9902470 (-) False grin1a
XM_039778917.1 mRNA upstream 3763 9942713 ~ 9948797 (-) True LOC120544996
XM_039778918.1 mRNA upstream 11210 9950160 ~ 9954737 (-) True LOC120544997
XM_039778925.1 mRNA upstream 19757 9958707 ~ 9963616 (-) True LOC120545003
XM_039778921.1 mRNA upstream 27138 9966088 ~ 9971850 (-) True LOC120544999
XM_039778920.1 mRNA upstream 27138 9966088 ~ 9971235 (-) False LOC120544999
TU235686 other downstream 48861 9861001 ~ 9874345 (-) False grin1a
TU235701 other downstream 79707 9842812 ~ 9843499 (-) True G174120
TU235399 other downstream 851998 9070162 ~ 9071208 (-) True G173900
TU235313 other downstream 1289307 8625482 ~ 8633899 (-) False LOC120545754
TU235162 other downstream 1565179 8357723 ~ 8358027 (-) True G173727
TU235744 other upstream 158426 10097376 ~ 10108283 (-) False gtf3c4
TU235941 other upstream 1222290 11161240 ~ 11164355 (-) False LOC120545042
TU236123 other upstream 2417978 12356928 ~ 12357890 (-) True G174439
TU236126 other upstream 2451605 12390555 ~ 12391484 (-) True G174442
TU236617 other upstream 4541512 14480462 ~ 14483417 (-) True G174799

Expression Profile