RNA id: XM_039780845.1


Basic Information

Item Value
RNA id XM_039780845.1
length 2389
RNA type mRNA
GC content 0.48
exon number 2
gene id june
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 3463902 ~ 3475242 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTAACGTTTTCGCTGTCTGACTAACTGAGCCTATGCAGGGACGCTATCActaattattaaaatgtgtttcaatCAGCAATAACAAGGACGTGACATAACcgattaaacattttttattaataatgagCCCTGGCCTGATGTTAATAATATTTCACTGGCACTTTGTCATAAATTATTGGCTCATTATTATCGGATGGATCAACATGCACTcgccttctcttcttctcttcgtCCTGCCTTCATCCTCCAGCCGCCGACGTCAGGGGAACATTTCAATCCCCTCTTATATTCAGGATAATCTGATTATGAAGATTTCCTCTGAGACGCCTTTTTGTCAATGACAGCTAAGATGGAGACACCTTTCTACCACGATGACTCCCGCTTGGCTGAAGTCGTCCCCGGCTTCACCCAGATCGCGGAATACGAGCGTTATCCGGGAAGCAAGATGCTGATGAATAAGAAGGTCATGTCAATGGTGGGCAGTCATCACTTCCCAGGCGGTGGTGCAGCAGGAGGCAGGGGCGGAAACCACCACAACCTGGGACTCGCCGGCAACAGCTCCTTGATGACATCAGCGGCGCCATCGACGGACATGAATCTGCTGAAGCTGGCGTCCCCTGACCTGGAGCACCTGATCATCCAGTCCAACCAAGGACTGGTCACCACCTGTCCCGTGTCGAACTCCAACAATCCCTTCATGTACCGCAACCAGGCCACCAACGAGCAAGAAGGATTTGCTGATGGCTTTGTCAAAGCGCTCGCCGACCTTCACAAGCAGAACCAGCTGGTGGGAGGCGGCTCCATGTCCCCGTCCTCATCCTCCACCGTCTCCCTGCAGACATCCTACCAGAGGAACCTGATGTCCAGCGCAGACATGCCTGTCTACACCAATCTCAGCAGCTACAACCCAGGCCAGGTGACGTACCCTGTGGGGCAGATGGCGTACGGTAGCGCCTCAGGCCATGGTGGTGGTGGAGTCCCTCAACACCACACCCGAGGCATGGACGCCCCTCAGACTGTCCCTGAGGTGCCTCAACCGCCGGGCGACCCCACATCCCCGCCCTCCCTCTCCCCGATAGACCTGGAGACACAGGAACGGATCAAAGCAGAACGCAAGAAGCTCCGCAACCGTATCGCCGCGTCCAAGTGCCGCAAGCGGAAGCTGGAGCGGATCTCGCGGCTGGAGGAGAAGGTGAAGGCTCTTAAGAACCAGAACTTGGACCTGGCCTCCACCGCCGCCATGCTGCGGGAGCAGGTTGCGCAGCTAAAACAGAAGGTCATGAGTCACGTCACCAACGGCTGCCAAATCGCTGTTGGCTCAGCCACTGCAAAgtctggaggaggagggggaggcacCGGCAGCGAGGACTCCAGCTGCTGAGGAGGCGGGACACCAGGAGAATGTGCATGGGAAAATAAGCCGATAGGTCGAGAGGCCGAGGGTTTACTTTGACCATTTTGTCGTTTTGCTCGAACTCTCGGTCGGAGCGAGGCAGAGAGCAAGACGTCAACGACGCCTCAACAGGACAGATGGACGTTTAACGGGATTTATGTAGCCCCATAAACCGCTGTCAATCACCCAGCCagaggggggcggggcttagagGAGAGCGAAGTTCTGACGTTGAATTTTTTAAGAGGAGATGGGGGCTAATTTAATTTGAAGAGACTGTGTATGTGAACAGgcacatttatttgacaggtgAACTACATTTACTGACAGATttccaatttttattttcagatgtCATCTCAGTAAATAAACTGTACTGGAAAGAATGGAAACAATTTTCCACCACTGATTTTATTCTAAGTTACAGTAAAAACATTGTTTGAATAACTcaattttttacagtgtgaagttgatcttttattatttaatacagAGTTGAGGAGATCAAAATACTCAAAGCTAAATTATTGTGGAAATAATCAGATTACTTTTAGTTACAGTGAGAACTGTAATTTTCTTGTCATAATTTACAATAATCGGAGTTAGGAGAGTGTCAAAGAGACAATTTCAACATAACTTTTCCAAATCCCGGAAAACTGCTCAAAATGGCCGATACTGCAGTTTTGTtttgtaatctgattactgtaATCTCTTTGCTTTTACTACAATCCCACTGTGTGTTCACGCAGCGGAAGAACCATCACTTTACAAAACAGACTTGGACAACCCTGTTTTTACAGTAATTTATTATGGTTGTGATAGATATTATGCAATCTGAGTACTGCACTCTCTTTACTTGTCTGTAACTAAAGCTCAGCTGTGGTTGGTAATAATCCAGTGACTGtttaaaatgttgaactgtgtttctgtgttttcttcGTCTGTTGTTGCTGGATGTTAAAAACCTTTAAATTTATGTCTTCATGAGGAAATA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233656 lncRNA downstream 802 3460345 ~ 3463100 (-) True G172468
TU233629 lncRNA downstream 93104 3363517 ~ 3370798 (-) True G172444
TU233628 lncRNA downstream 100683 3362747 ~ 3363219 (-) True G172443
TU233624 lncRNA downstream 105382 3358125 ~ 3358520 (-) True G172439
TU233616 lncRNA downstream 136668 3325766 ~ 3327234 (-) True G172432
TU233694 lncRNA upstream 43100 3518009 ~ 3518953 (-) True G172504
TU233697 lncRNA upstream 65366 3540275 ~ 3547689 (-) True G172507
TU233740 lncRNA upstream 193019 3667928 ~ 3668180 (-) True G172549
TU233744 lncRNA upstream 207442 3682351 ~ 3683384 (-) True G172553
TU233747 lncRNA upstream 232675 3707584 ~ 3707824 (-) True G172556
XM_039780653.1 mRNA downstream 181950 3277549 ~ 3281952 (-) True LOC120545955
XM_039780659.1 mRNA downstream 217012 3168626 ~ 3246890 (-) False mbd2
XM_039778739.1 mRNA upstream 8816 3483725 ~ 3505303 (-) False LOC120544885
XM_039778737.1 mRNA upstream 8816 3483725 ~ 3505303 (-) True LOC120544885
XM_039780821.1 mRNA upstream 77529 3552438 ~ 3582804 (-) True LOC120546063
XM_039779252.1 mRNA upstream 125629 3600538 ~ 3630312 (-) True crata
XM_039780782.1 mRNA upstream 208634 3683543 ~ 3685682 (-) True ier5l
TU233470 other downstream 478642 2984822 ~ 2985260 (-) True G172311
TU233144 other downstream 1861746 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 2293113 1170203 ~ 1170789 (-) True G171868
TU233826 other upstream 411679 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 666944 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 1295908 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 1375039 4849948 ~ 4897357 (-) False odf2a
XR_005636625.1 other upstream 1375039 4849948 ~ 4897357 (-) False odf2a

Expression Profile