RNA id: XM_039780857.1


Basic Information

Item Value
RNA id XM_039780857.1
length 6332
RNA type mRNA
GC content 0.47
exon number 15
gene id il6st
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 1820764 ~ 1863988 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGGTCCTACCCCAAAACCAGTGCAGTGGCACGGACTACCACAGGCACGGACGCGACACAAGCGGACACAAGTGCCAGCTGAAATTCTTGTTTTAGAGCTTGTTAGCTAGGTTTTAGCAATACTTAAATATGGTATTAATCTAACAGAGATTACACAGGGACCAGCATTGAAGCCAGTTAGTTCGTCGTCATCATGGTGTGTGCCAGAGTGCTCCAGCTGTTGGCGTTAGCTTGCCTTGGCTCTGCTCTACCTGCCAGAGTTGATGTTCCGGGGAAGCCTGAGAATCTGTCCTGTGAGGCAGTTCAGCAGAAACAGTACATCTCTACAACTTTCAGCTGTGAGTGGCAAACAGTAGGAAGTCAGACTGCTACAGTCCCTACATCATACACTCTGTATACTGCAGTCCTCCCAGGGAGTGGGCAGCCCTACAGTGtgacaacacaaaaaaacagaaccCAAGTGAAGTTAGGGGACACTTTCCCCCATTATATGACGCTGGAGGTCTGGGTGGAGGCACATAATAAACTGGGGAAAATAGAATCTGAGCATCTGAAAGAAGATTCCGGATGGTTTGTGAAAACAGACCCTCCTTCGGACGTCAAAGTCTTTTCAGAGAAGAGTTTTCCCACTTCCCTTCTGATAAACTGGACTCATCTTATTCCTACAATACGTCTGAAATTAACCTATCGAATAAGATACCGCCAGAATGGGACTCAAAATTGGACTCCTGTACCTCTCGGGGACACTGCATCGGACATAAAGTCCTTCAGACTCCAGGACCTTCAGCCATACCAAGTGTATGAAATCCAGGTGTCCTGCAAAAATGCCAAGGAGGGCCATGGTTACTGGAGCGACTGGAGTACCATCGTTACCAAGAGAACACCAGAGGCCCGACCAACAAGTAAACCAGATCTATGGAGAGTCATTGCTGAGGGTGACGGCAAAAATGAACGACGAGTGCAGTTTATTTGTAAGGATCCTGTGCTTGCCAACGGGAGGATAGTAAGCTTCGACATAAAGATTCAAGACCCAAAGGATAAAGTCAAGAACGGAAGTTTGGAGTGGAAGAATATACCCAGATCCAGCCAGGGGAAGATCACTGATCTCAAACAGATTGACCTGGCTGACCAGAAATCTGTCAGAGTGTACATCAACGCTACCAATTCTGTGGGGAAATCTGATGAGGCATCGTTATTCATCTTGGCAAAAGCACGTGAGTCAGAGCTCGCCCCGGTTGAAGAGCTGAAGGTGTTTCCCCACAGGGGCCAACTGTGGCTGGAATGGAAACCCCCCAACAGTACAAAGTTGGTGTCTGAGTATGTGGTGGAGTGGGTCGGAGGTGCTCAGATAGACTGGCAGAAGGAGAAGAGAAATACCACACACACTGCCATTAAAGGCCACCTTGACAAGTTTGTTTGCTACAACGTATCGGTGTATCCAATATACAGTGGATGGATTGGGAAGCCCGCAAGAAAAGAAGCCTATCTCGAGCAAGGAGCTCCGTTGGAAGCCCCCATTGTCAGATTGCACAAAGCAGGACGTAACCAGGCCACGCTGAACTGGACGGAGATTTCCCAAGGCAGTCGTCGAGGCTTCATCACAAACTACACCATCTTCTACACAAGTGGAACTGAAGTACACAACATAACCGTGCCAGCTAACACCGCCTCGTACACTCTGACGTCATTGTCAGGCAACACCAAGTATGACACTTGGGTCAAGGCTTCAACCATCGGAGGCTCAAAGATCAGCTTTAATCACTCATTCACCACTCTGAGATATGCCCCAGGAGAGATGGAGTTCATTGTGGTCGGAGTGAGCCTGGGCTTTCTGTTTATTGTTGTCATGACCATGCTGCTCTGTGTCTACAAAAAAGATGTGATCAAGGAGAACTTTTGGCCTCAGATTCCAGACCCTGGAGAGAGCACCATCGGAAACTGGTCGCCTGATTATCCTTTGAAAGCTGACACACCGAGGGAGAACGGTCTGTCGGGCATCAGCGTGCTCGACATGGACGTGTGTGACGGGAAGTGTGTGTTCGAGGAGGACAAGGCCAGTCTGTCTCTGAAGAAGGGCAAGTATCTGTCGGAGGAGCACAGCAGTGGCATCGGCGGCTCCTCCTGCATGTCCTCGCCGCGCCAGAGCGTGTCCGACAGCGACGAGGGCGGAGACATGGCCGACACCACGGCCAGCACCGTCCAGTACTCCTCGGTGGTGCCGGCGCCCCCCAGCGGCTACAAGGGTCAGACCCCCAACTCCCAGCCCCAGCAGGCTCTTTTCTCCCGGTCCGAGTCCACGCAGCCCCTGCTGGACTGCGAGGAGAACCCGGACGTGTTGCAGCAGGAGGGCAGCAGACAGTCCCAGCGTTCCCCCCCCCGACCGCCCCGCTTCACAGATGGCGCCGACCCCGCTGGCATTGCGGAGCAGCAGGAGCTGCTGGAGCCTCTGGACTTCTGTCCACTGGGAGAGGACTCTGAGCAGGCGACGCCTGTGGACGGCCAGGCTGCTGACTGGCTGCCGGCGGCGGCGCCACTCTCCAGCTACATGCCTCAGCTGGGGGGCTACAGGCCACAGTAACAACACATGTCACCCATGGGAACGGTTCTGTGCCTTTTTTGTTTAAAGTCTCTGAAcagccacacaggtgttttcagttctTCTGGCTGATGTGCTCATGTTGAATGTGGGCCACAGCTTAGATGGGACTTCTTAGGTctagggatgtcccgatcacAGTATGGGAGTGGAGCcgattttggcttttttttttaactgatcgGAGAGCGGCATTTACCGTGATTATCTTACTCCGATCACGTACATCAGCTTGTAGGGATCGCTGCCTTTAACCGCACACGCCCTGCGCCACAAACGCACCGCCAGACTGCCTGGATGGCGGCACTTTCAGACCAAAATGGCGCGGCCAATCACCAGTGTTTGTCCAGAGAGAGTCTCGTAGCTCGCCTTCGTCTTCCTTAGTCACCTGTTCCTTACACAAGCGGATTACTCTAATTCTCCACCCTTCTTCCGTGATTCCAACGCGTTCAGGCTGTTATTCCCTGGAGCCGACATCGGTAAACACGAGAAGAAAAAATCTAAGATTTACtattaaaggggcgctatgcagttttggtaATTTCTTCGcggttttctctctttttgctcgcaggtttctctatagagctccccctacagcttcagaatagatatttggcaatgCTGTTGTAAAAACTCATTGGCGActatagtgtgaaaaactccatcgctaccttatAGCTCTTATAgttcttatagctagccggttcctggatgtgtgcagtgccgtgaagcagtTCGTTACATggtgagacctgatatcacgccatacTTCCTGGCGCCGAGGCTGCCGGCTCACAGGTCCAAAGTTgcgagggtggtttttccgctcacaggcgctaggggggagcgagacgaccaccattcaactcgaaaaaaaagtcatataaccattccaatgtcTCCGAAGATGTTCAGTTAAGGtcaattaagctaaaaaaactgcatagttcccctttaagggCAAGAGGCATCACTAAGGTTAGTTTTTGTTGTCCAGCGGGGAACTTTTTTTGACAGAAAAGACTCCCATCCTCCACTAAGTTAAATTGTATTAAGCTGACGACATATTTTAGTAACTTTGTTtacttagttatttttttaaacaaaacaaaagcgcTGTGCAGCTCTATTATCTGAGCAAATACAAGTATCGGATCGGGACTCGGTATCAGCAGATAttcaatatttcaaaaaatcGGATCGGGGGTCAAAAGAGCTGATTGGGACATCCCTAGTTAGGTCACAAATCCTTTCTACCGACAGGAATGATAAAGGTGTCATTTGTCCcgccctaacaggtgcaacaacACTAACAGTGGACTCAGGcagatgtcaatcaatcagtctaggaacccccccacacacacacacacacacacacacacacacacacacacacggtcctgGGAAGAGGGTCCAATCAGCCACATTAACTCagaacacctgtgtgggtgttgaGGGCCTTTAATGCCAAATGCAAATTTCAAGTCTTTGAAGCAGTAAAgaatagggctgtgcaattaaccCAAATGTTAATCGTGATTACAATTCTGGCTCCTAATGCTCACAAATAAACCAATTAATTGAATTATACATTACCTTTTGCACCAAACTCttactttgtcttttgttttgaaTGAGAAAGACGAGAAGGATGAAGGGACATTTCACAGTTGAAGGTGTGTTCACTGTTGATTTCTTTAACCACttcactgtttgtttgttttaactctaataattgcaacatctttccaaaagacaACAAGCAGCCGTGTTAAACgctcgtgatttcaatatttacCAAAATACTTgcgattatgattttttttttttttcaccatggAGCAGCCCTGCTGTAGCAGCATAACCAAGTATAACTAGTTGAGGATGCTTCAGGAGACTAGTCTGCAATAGGAATTAGAGCTTGTAGCTGTAGTTTTGCTAGCTTTGCACTCCCATGGGGAAAAAAGACGCAGCATATCTTTGTGGTCAAATAATGCCCCATACTCGACACACGTCacatttttgtgtgcgtgtggacCATAGTTTGGAGAGTGATGGGTGCTACAGCAGGCAGAGAGAGGTCTGACACAGGGAGTCTGTGGCTTCATCTACACCACTACCTTTTCATTTTAAGGCCATATCGATCGCTGTCCACACAACCCCGGAGTTTGCTAACCAAAAtgggggcagcagtgtttccaaatttCTCCGTTTTAGGGGCTTGGAAACGCCGCGGTAGTGTGGACGCGGGGCGTGAACGTAGCAAAAGAGCTTTGTTTTTAGGCCCAAACGTAGCCGTGGAAAGGTAGCCCTTGATTGGCGCTTAGTGTTTGTGTTGGAGCGGTCTCTTGCTGTAGCGCCCTCTTGTGGAGGGACTGGACCTCAGCAGGGATGTTACCGTTGGTTACTCGGGCATTTCATTGTCATCGTCGTTTAATGGCACAGACTTATGTTTTTTAGTTTAAGTATATACACTGCACATGAATGTTATCTAGTAAAAGAAGTTCACACTGACATGTACATGATGAAAGGTATCTTTAACTGCcttttgaaagtaaaaaaaacatttttttttaaaacatttaaaatgcaatgCATATCTGAGTAATAAACAGTTTCTAGCTCATGCGTTATCATTTAGTTGAAGCATCACCTCCGCTGTATTTTTCTATCATTTTATGTTCATTTCTAGAAGATAAAGGGCTTCCTGaagatgagatttactccttaggtcagagatcttcaacaggggggcCGGTacccctggggggggggggggggtcctcgGAGTTGCTGCAGGGGCAAATTATTGTttgatagtaaaaaaaaatatataaatacaccaTTATTAGCAATGTATACAACATTGATGATAAGCATACTGGCCTAGAGCTAAGCTAGCCATAAGGTAGCCAACCAgtttaaggattcactgtgtcaCATTTTTTACTTTAAGACATGAAGTATAAATATgccaacaatttttattttaaaagcttagtaTTGTACGGTGAAAAGGTATGTGTGAAGGCTTTAGGTCGCCCTTtgcgttattgtaggcccagtttaatatgcaactctaTTTTATACACTATATATGTAGTAGGGAGTCCTGCTCCGTCTCTTTTTCAGCTAAGAGGTCTTTGGCTTTTTAAATGTTGCCTTacgtattgaaattgggtaatgaatgacgaggcattttttccaATACTTTTAGAGGCAGTTTGGTCGGAGCCTGAAAAGGATTGAGTTAGGTCCCCAGCCCTACCGTCGACCAACAGCAGCTTGATGCGTACAGCTGTGAGTAGTTGTTGGGAAGTGGTCTGACCATGTGATCAATCACTGTGATTTTTGGGAGTTGGGCCTATGGCCTAATTTCTCTGACCTGACTGAAGGATTGCAGGGCTCTGGACacaataaacagaaattccaccttaatggaaaaaaaatctgcttGCCTGCAAAGTTTTGCCTTTTTTGACTGTTTTATACTATAATATCTTCAACATGTTTTAGTGTTTTAGTCGTGCTATATGAAAGAGAAGGACTACTGCGGACTGGATGTTGTGtgaatttctatttttttttttttttcaaagcacGGTTTCAGTGGGAACTGTTGGAGAGGTGAAGCGTTTCCTTACCTGCCGGCAAAAGTTAAAAGCTTTCTCGGTGTTGGAACGCTGTATATGCTAATCATTatcaaatatgaaataaatgttttaactaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233173 lncRNA downstream 79334 1741024 ~ 1741430 (-) True G172053
TU233110 lncRNA downstream 262989 1557544 ~ 1557775 (-) True G172000
TU233097 lncRNA downstream 324237 1494835 ~ 1496527 (-) True G171987
TU233096 lncRNA downstream 326447 1493231 ~ 1494317 (-) True G171986
TU233062 lncRNA downstream 363150 1451207 ~ 1457614 (-) False G171959
TU233243 lncRNA upstream 82656 1946644 ~ 1946905 (-) True G172111
TU233287 lncRNA upstream 218820 2082808 ~ 2083242 (-) True G172150
TU233288 lncRNA upstream 225725 2089713 ~ 2089979 (-) True G172151
TU233317 lncRNA upstream 226435 2090423 ~ 2097164 (-) True G172180
TU233382 lncRNA upstream 465697 2329685 ~ 2329970 (-) True G172231
XM_039780855.1 mRNA downstream 6936 1802998 ~ 1813828 (-) True purg
XM_039780006.1 mRNA downstream 25868 1746583 ~ 1794896 (-) True slc38a9
XM_039780008.1 mRNA downstream 25869 1746583 ~ 1794895 (-) False slc38a9
XM_039780007.1 mRNA downstream 26215 1746583 ~ 1794549 (-) False slc38a9
XM_039780009.1 mRNA downstream 38762 1746583 ~ 1782002 (-) False slc38a9
XM_039780683.1 mRNA upstream 23549 1887537 ~ 1943510 (-) True tpm2
XM_039780682.1 mRNA upstream 23549 1887537 ~ 1943508 (-) False tpm2
XM_039780684.1 mRNA upstream 40258 1904246 ~ 1943509 (-) False tpm2
XM_039780681.1 mRNA upstream 40258 1904246 ~ 1943508 (-) False tpm2
XM_039780446.1 mRNA upstream 84915 1948903 ~ 2073106 (-) True tln1
TU233144 other downstream 218608 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 649975 1170203 ~ 1170789 (-) True G171868
TU233470 other upstream 1120834 2984822 ~ 2985260 (-) True G172311
TU233826 other upstream 2022600 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 2277865 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 2906829 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 2985960 4849948 ~ 4897357 (-) False odf2a

Expression Profile