RNA id: XM_039780861.1


Basic Information

Item Value
RNA id XM_039780861.1
length 3298
RNA type mRNA
GC content 0.40
exon number 4
gene id parm1
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 7664258 ~ 7680152 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGGAGCACAGAGCACAGAGCAGCAGCCACACAAGGGTCGGGAGGTATACACAGTCAACAGAACACAATGATGAGGGTCAGCCTGCAAACTCTGATAACATGTCTACTCTGGTGCGGTGCACTGACGACGATGACGACGACAACAACAAACGTCACCTCCCAGGCTACGACTGGGAAATCAACTACTCAACCTGCCATGTCAACTAGTCCTGTCGCCAATAGAAACGTCACCGATACAACTCCCTCCACCAACAATACAGCTTCCGTAACAACTGCTTCAGTCACTTATATAAATTCCACCAGTGCGACTCTGCCCACCAACAATACAGCTTCCGTGACAACTGCTAATGTTTCCAAAGTAAATTCAACCAGTGCGACTCTGCCCACCAATGATACAAGTACAGTGACAACTGCTAATGTTCCCAAAGTAAATTCAACCAGTGCGACTCTGCCCACCAATGATACAAGTACAGTGGCAACTACTTATGTCACCGATATAAATTCCACCAGTGCAGCTCCATCCATCAACAATACAGCTGCCACCCCAACTTCAGCCACCACTGTGAAAAACAACACTCCAGACTCGGCCACTTCACCTGAAACACAAACCGTGTCCAtgtcttcttcatcttcttcctcATTCGCATCATCCCCATCTATAACAACGGGCACCCAGGCCTCTAGCACCAGCATTACCAGCTCCGGCACCACACTACAGGAAGGACACGAGTCCAAGGCTCTGAGCTCAGgAAGTATTGCAGTCATTCTCTGTGCGTTCATCGTAATCGTCCTCCTAGTGTTTGTCGGGCTGTACTACTACAGGATCCGACACAGATCCTATGGCCCTCTTCTGGAAAACACTGAACGCACCAGTTTTGGAAACTTCGGCAACCCAATGTATGACCCTTAAATCTTAAATTAAATTAGATCTAATCCAATCAGAGTTCTGAATCATCTTGTATTAGACTACTTACCAACAATGACACCAATTAAAATTAGAATAAAAGGACTATTTGAGTACTAAATGCACATGTGCTGTTACTGAGCGCTGCTGGTGATTAGGTTGAGATTATGTTAAATTGCAAactgtctttttctgttttatgttgtctgttttgtcactgtatattttaatatgGAACTATTATACTGCTCTCTTGGCCAGGACTCCATTGAAAATGAGATTCTGAATCTCAATGGGATTATTTCCTGGTAAAATAAaaggttaataaaaaaataaataataaaatgacttCGGGGCGGTCACATTTTAGAACTTATAGCGTGAttgcaaaatgcaaaacaaatgtGACGTTTCTATTGAACTTTGTTCAAGTagcctcattttttttttttttatagttaacAAGGAAGGACACAGAGTTGCAGTTTTTACTCAGGTAGCTTTTAAAAACAGCTCTGGCTGCATAGATACAGCACGAAATTATAGTACCAAAAGTGAAAGGTTAAATCACAGTAAAAACAAGCGTGTTCATCAGGGATATCATGTATCTCACAGcatatttgtaaaaaagaaaaaaggtgtggattaaaaaaaaaaaaaaaaaaagttaaaaaaaactttgtaaaaTGGAATATTGAAAGGCAGTATTTAGGAGTGGTAATAGATGAGGAAGATCTGAGAAGTGATAATGTTTCACTGTGAAAGCTgcaatggggaaaaaaaaaaaaagtgtgtgataaatgaagtaaaaaatataaaaataaggcTTGAATTTAGACAGAACATACAGTTCAATTAATCCGCAGAAGACATGACACAAATGTTTCTTGTTTAATGATGGATTGTTCTGTCAGGCACCTATACTGAGATACTTTTTTCCAAGGCAGTaatcataatatataatatgtatattattgtattatataaatattgtaatATCTATGCTCAAAATCCCTCTCCCAATATATTGATAGGCTAATATATATTGCTATTCTAGGACAGGCAACTATGCAGATTtggtccccccccctcccatgtTCACTTTGTGCTTATGGCCTTGCTTTCTTCTGATTTAAAATGTGAATTGATAAGGTTTCAGTCCCAACAGAAGATAAATGTTAAATATCAACCTGAATGCAGCCAGCTACACAAATCTCAAAGCTTAGACAGCGCTCATCTACAAATGTCCTGCTTTTGAATGTACTTTATGATTCTGTAGATTATAGGGGGAGGTGAAGCAAGTTTGTATTGAGTGCCATTTGTATTGAGAGGAAAAGAGCAATGGAAGATGGAGATTCTGAGAAAGTGCTGAAAAGGATGGCGACGACACTTAACAACACTTATCGAGTTTGGAAGTAAGATTGAGGCAGAATCCTGAAATGAATATGAGCAATATGAGCAATTTTGAGCAAAAAGGTAAAAGCTAATGCTGGCTTTCATGTCCTTGCAAGCGTTTCAGAATTTCTCCTATAATCTGGAGAGTAGAAACATTTTTATGCAACACAAAAAGGGGCATCGTTAGCGTCAGCAGCTATGACAACCCAGACAGGAGACTAATTATCTGaggtttcattcattcattttcaaatgaagtgttttaaagtgtttttttttatattatttattttttaaataaactaaatggtgcagaggcagagagggagacTGGCCCCTGGTATTCATCCTTCTGAGGTGTCCTTGAGTAAAACACTGAATCCCCTTCCTGCTCCATGTGccgctgacctttgacctctctgTAGAGGAACCAAATAGAACAGCAATCATTTTAGAATGGAGGACGGGAGATAATTGAAGTCACATTACATGTGGCCTTAATGCAGTGTGGGGCAGGGGACTGTGTCTCTCCCAAAACTGATAAACTTcaacttttagttttagtttttttttttattatcattattgaaTGTTATTAGTGCgatgtgttttcatgtgtctgtgtgatttTGCTTTGCTGAGCAGCTCCGCCAGACtgcatttttttggggggggcatttttaggcctttatttgacaggacagctgaagacatgaaaggggagagaggggaggtaatgacatgcagtaaagggccgcaggtcggagtcgaacccgggcccgctgggTCGAGGTGTAAGCctctatactgtatatgggcacccgctctaccaactgtgctatccgggcgccccagACTGCATTTCAGATTGTAATTTTCGCCCCTTCAGTATTTCATTTGGTAATGTTTGTTTGCACTTAGGTGaataataatgtgacatttcaTTGTGCGATATGATTGTATTAAATTGTTTGTGCAATAAAAGTGATGAAGAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234983 lncRNA downstream 35505 7628541 ~ 7628753 (-) True G173573
TU234972 lncRNA downstream 127642 7536365 ~ 7536616 (-) True G173564
TU234969 lncRNA downstream 176353 7487597 ~ 7487905 (-) True G173561
TU234961 lncRNA downstream 187253 7476541 ~ 7477005 (-) True G173554
TU234957 lncRNA downstream 285884 7377127 ~ 7378374 (-) True G173550
TU235059 lncRNA upstream 144535 7824687 ~ 7825279 (-) True G173638
TU235083 lncRNA upstream 229219 7909371 ~ 7912301 (-) True G173661
TU235095 lncRNA upstream 261436 7941588 ~ 7944249 (-) True G173673
TU235119 lncRNA upstream 408015 8088167 ~ 8088441 (-) True G173689
TU235135 lncRNA upstream 550507 8230659 ~ 8230858 (-) True G173704
XM_039780870.1 mRNA downstream 23769 7635420 ~ 7640489 (-) True scpp8
XM_039778810.1 mRNA downstream 142167 7479129 ~ 7522091 (-) False sh3bp2
XM_039778808.1 mRNA downstream 158592 7479129 ~ 7505666 (-) True sh3bp2
XM_039778809.1 mRNA downstream 170383 7479129 ~ 7493875 (-) False sh3bp2
XM_039779921.1 mRNA downstream 198199 7397054 ~ 7466059 (-) False vldlr
XM_039778913.1 mRNA upstream 100136 7780288 ~ 7782476 (-) True htr1ab
XM_039780129.1 mRNA upstream 167572 7847724 ~ 7866608 (-) True c7b
XM_039778728.1 mRNA upstream 266710 7946862 ~ 7948604 (-) True gadd45gb.1
XM_039780470.1 mRNA upstream 380295 8060447 ~ 8073342 (-) True LOC120545849
XM_039780614.1 mRNA upstream 418707 8098859 ~ 8202622 (-) True LOC120545930
TU234856 other downstream 504171 7152870 ~ 7160087 (-) True G173470
XR_005636815.1 other downstream 843392 6820812 ~ 6820866 (-) True LOC120546140
XR_005636634.1 other downstream 2263580 5396633 ~ 5400678 (-) True LOC120545230
XR_005636624.1 other downstream 2766901 4849948 ~ 4897357 (-) False odf2a
TU235162 other upstream 677571 8357723 ~ 8358027 (-) True G173727
TU235313 other upstream 945330 8625482 ~ 8633899 (-) False LOC120545754
TU235399 other upstream 1390010 9070162 ~ 9071208 (-) True G173900
TU235701 other upstream 2162660 9842812 ~ 9843499 (-) True G174120
TU235686 other upstream 2180849 9861001 ~ 9874345 (-) False grin1a

Expression Profile