RNA id: XM_039780864.1


Basic Information

Item Value
RNA id XM_039780864.1
length 3829
RNA type mRNA
GC content 0.42
exon number 8
gene id taok3b
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18562440 ~ 18571048 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGAGGGACTGAGGAAAGAGATGAATAGAAGGCACCAGAACCACCTACCATGACCAAGTGCGCTGTAAATGTAGGACAGAAATTCGAGTGGAATACAAACGGATCATCAAGCGAAATATTCGAGGGAAAACCATGTTTGGATGTGCCTTATCTGATTCAAAAAAATTTCATTATGGTACCACATGCGATCATTGGAACACAGGAAAAGTATTTTTCCTCCCAAACATTTCTTGCATTTTGAAACGGAAAAGAAGAGTGGCAGTAAAATACATCTCTGTGCTATCTTTCTCCGATTATCAATGGTAGGCATTGCATAATTCACCCTTATCCACCGGAGCCATTTGGTTCCTCTCCTCTTTGAGAAGAGGGGGACGCAAGAAAAAAACGACTACATCCAGTAGCTGCCTTCTCGGTGATGCCTGCAATTGTTTGGCAATGCCCTTTTCTCTCTTAGGAAGAACTTGCAGACAGTAGCGGGGAAACAAGTAGGGGAAGGATGCATTTAAAGCTGGATGTGTGCTGCATTCAGGGAGATTCGGCAATAATAGCAGCTCTAGCAGAAACAGCGAGTGTGGAGGGCCTGGGAAGCCCCCAGCCCCACtatctcctccttttcctccccCCCTGCAGGACCATGCTTGCGTGAGGGATGAGGCTGTGCACAGGGACACCAGGCCAGAGCTGCGGCCTACTTCTCACAAGAGCCGGTCTCTCGACTGCAAGATCTGTGAACACATTTCCACCATCAAATCAGCATCTTTGGTCATCAGGTAGATCCAGGAGCATGAGCAGGACTTTGAGCTGCGGGAGCAGATGTCTGGGTATAAGCGCATGCGGCGGCAGCACCAGAAACAGCTGATCGCCCTGGAGAACAGGCTAAAGGCCGAGATGGATGAGCATAGGCTCCGGTTGCAGAAGGAATTAGAGACACATGCGAACAACACTTATATTGAGCTGGAAAGACTGGCCAAACGCCACGCTGCACAAACAGACAAAGAGATGAAGTCAGTTGCAGCTGAAGAGAGGAGGATCCAGCAACAGATTGTTGCTCAGCAAAAGAAAGAGCTAACTAATTTCTTAGAGAATCAGAAAAAGGAGTACAGGCTTTGCAAAGACAAGATCAAAGAAGAGATGGATGAAGACCCTTGTACACCCAAGGAGGAGAAGCAGGAGCGTCTGTCCAGGCACAAAGAAACAATACAGCGCTctcaggctgaggaggaagcTCATCTGCTAGCCCAGCAGAGGCTAGTCTACGATAGGAGCTGCAGGGCCCTCAAACGCCGGAGTCTGGTCAGGAAGCATGAGTTTGAACAGGAGCAACTGAGAGAGGAGCTGAACAAGAAGAGGACCCAGAAGGAGATGGAACATGCTCTGATGATCCGGCAGGACGAGTCCACCCAGGACATGGAGCGCAGACAGCTGCAGATGTTGCAGAAGCTGCGTATTGAACTCATGCGGCTGCAGCACCAGACAGAGCTCGAAAACCAGGAGGAGTACAACGGCCGGCGGCAGAGAGAActacacaggaaacacactctggagcagcggcagcagcccaGAAACCTCAAGGTTGCTGGAACTTTCTCTTTGCCACTATGTGGTTATTTAGCACTTGAGATGCAGATCAAGAAACAATTCCAGGATACTTGCAAAGTGCAGAACAAGCAGTACAAAGCTCTTAGGAACCATCAGCTGGAGGTCTCTCCTAAAGGCGACCATAAGAACATCCTTAAGAGCCTAAAAGAGGAGCAGACACGCAAGCTGGCCATACTGGCTGAGCAGTATGAGCAGAGCATCAACGAGATGATGGCTTCACAAGCGATGCGACTAGACGCAGAGCAGGAAATAGAGTGCCAAGCTCTGAAGCAGCAGCTGAAGCAAGAGATGGAGCTCCTGGATGCCTACCAGAGAAAAACCAAGTCACAGATGGAGACCCAACACGAGCGAGAGCAGCAGAAACTTGAGCAGAAGGTCTCCATACGCAGGGCACACCTTGAACAGAAGattgaagaggaactgGCAGCACTTCAGAAGGAGCGCACCGAAAGGATCAAACACTTGTTGGAACGTCAGGACAGAGAAATTAATGCTTTTGACACAGAAAGTAGAAGCCTTGGCTTCAGAAGCCTGGAATCTCTGGACTTCCCCAAAGAAGACAACAGATGAAAGTGGATTTATCTTTAGAGGACAACAAATCCTTGCCCTTTTTGTCACTACCATGGTGACAAAGCTGGATAACTTTCTCTAttgcttttcttctctcttagATATTGCATCTTTGATTTGAGGTGTTACGTGCAATGAGAACTTCTTTTGTGAAACTTGAAGGgtgaaaggaaaacaaaaaaaatctacaacAACATGTCAATAAAAATCAAACCTAGTCAGTGTAACTCAAAACTTATGTGTTAAAAATAACAGACTCTTTCCTCCATGCCATTCACTCCTTTTGGTATGAATTGAATAAATCAGGAAATTTTAGTAAAATTGGCACTTTGATATGTTATGTAGAAACCCATCATGTTCGTATGATGCttaatgtgtgtgttacatGGAGGACATTGTGGAATGTGAGCTGCGGACTCCACCGTGGTGTTAAGCTGCTTTGTCTTTTCtattggttttattttgttttatcttaTGCTCTGAATGTGAATATTACTGTATGGGGTCACTGGATAAAGTCAgagtttattaatttattattttggtcATACTTCCATATTGTGCTTatgcatacagtatactgtggtCTCTCACATTTCTAGGCAACAGTTCTtaccttttcttttatttgatatATAGGATCAATTGGAATTCGCTTGATCAACCCGTTTATCTTATCACAATTCAAGATCCCACTTGGTAAAACTGCTTATTATTGCATGCACTTTAAGGACAAATTCAGGTTGTGAAGTGAAGCATGAATCTGTCAGAGATTTTAGCTGTTTGtaaataaaagcattttttgtttttttgttttaagccTATGGATACTGGACATAAGCGCCATATTTGATATGATAATTTCACAAATGCCTTTATTTAAGTTGTGCCTGAAGCAGATTTAAGTTCAGTGTTTGTTAtatctatattttatttactgaGGCCGGCAccattttgttttggtttcatCTAAACTTGTGAATCATTTATTGTTCACTAATCAAAGTTCTTGTAAAGGAAAATGGTGAGACTTGTGCTGTATAACTTTTGATATGAATATTTGTACATGAGAATATAGCTAgaacatacagagacactggTCTATTACTGATAACAGAGCTTAACGATAAAGATTTTgcttcatttttgttttataatataGAGATATGGTCATACAGTAGCTCAATATATTGCTAAGTCAAATCACTAGACTCAGATTGTATAAATGCTGGTGGATGGAACCACAGACTTCTTATATCAGTATGGTGATCTTTTACGGATTGACGGTTCAACAAAAGCAAACACAACATGTGGGTCCAGATTGCATTTGAGTAATTAGTGTCTAATGATCAGATTTACATATTTTTTGCCATGTTCATTATGGTCGTTGAACAGGTTGCACAATGTTTCCATTTATACTGAATGGAAAGATAATTGTTTGGTGCTTAATTTCTAATACCACTTTTAGCCTTGTAGTTTTTTGTCTTGGAGAGACGAttgatttttacaaaatgtaaacatgaagCATTTTGAAACCCCCTCTGAGTCAAAACACTACTAAGTTTTTCAAACACTCATGACATATTTAGAGTACCCCATGCAGTGAAACCCTCTACAAATGAAGTATatgtatgaaaaaataaatactattTCATCACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237986 lncRNA upstream 96376 18464270 ~ 18466064 (+) True G175804
TU237970 lncRNA upstream 111372 18449802 ~ 18451068 (+) False G175797
TU237971 lncRNA upstream 111372 18449802 ~ 18451068 (+) True G175797
TU237965 lncRNA upstream 130743 18429684 ~ 18431697 (+) True G175792
TU237938 lncRNA upstream 140294 18421529 ~ 18422146 (+) False G175772
TU238090 lncRNA downstream 16711 18587759 ~ 18588293 (+) True G175891
TU238114 lncRNA downstream 79468 18650516 ~ 18651030 (+) False cabp7b
TU238116 lncRNA downstream 85476 18656524 ~ 18657617 (+) False LOC120545610
TU238115 lncRNA downstream 85916 18656964 ~ 18657617 (+) False LOC120545610
TU238118 lncRNA downstream 86642 18657690 ~ 18658284 (+) True G175917
XM_039780811.1 mRNA upstream 2007 18558560 ~ 18560433 (+) True LOC120546055
XM_039780809.1 mRNA upstream 4980 18548787 ~ 18557460 (+) True LOC120546054
XM_039780810.1 mRNA upstream 7344 18548787 ~ 18555096 (+) False LOC120546054
XM_039778801.1 mRNA upstream 14299 18536631 ~ 18548141 (+) False myo1hb
XM_039780308.1 mRNA downstream 2616 18573664 ~ 18575134 (+) True m17
XM_039780121.1 mRNA downstream 63978 18635026 ~ 18651069 (+) True cabp7b
XM_039780123.1 mRNA downstream 85899 18656947 ~ 18657619 (+) True LOC120545610
XM_039779670.1 mRNA downstream 104973 18676021 ~ 18686724 (+) False srsf9
XM_039779669.1 mRNA downstream 104984 18676032 ~ 18686724 (+) False srsf9
XR_005636603.1 other upstream 14299 18536631 ~ 18548141 (+) True myo1hb
TU237776 other upstream 484938 18075032 ~ 18077502 (+) False LOC120545364
TU237773 other upstream 484938 18076239 ~ 18077502 (+) False LOC120545364
TU237777 other upstream 484938 18076239 ~ 18077502 (+) False LOC120545364
TU237740 other upstream 489379 18067132 ~ 18073061 (+) False G175640
TU238138 other downstream 104996 18676044 ~ 18686728 (+) False srsf9
TU238143 other downstream 104996 18676044 ~ 18723785 (+) True srsf9
TU238154 other downstream 104996 18676044 ~ 18686728 (+) False srsf9
TU238450 other downstream 809229 19380277 ~ 19387442 (+) False LOC120545529
unassigned_transcript_963 other downstream 946187 19517235 ~ 19517306 (+) True trnac-gca_32

Expression Profile