RNA id: XR_005636606.1


Basic Information

Item Value
RNA id XR_005636606.1
length 652
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC120544937
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 20068760 ~ 20069830 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTATCTTAATTAGGCTACTGTCCGTGGCAATATCTCATTGTGTTCTTCGGTTTGATGTCTTTGAAGTAAACATGCAATGGGAACTTTAAGGAAAAAGACAAATAACagttataatataaatatacgttgtgtatctgtgtggtgGCCCTCAGTTCACTGACATCAGCCAGTGGAGTACTAGAGTCTCTGTAACTGAAGAAACGCTGTGTCATTGTCTTGCAGTGTCAGTGCACACACATCATTACACTGACCACATGGGAACAGATGACTTCAAGACTAAGTAAAGAAGAAATTAAAGTGGAACTATGCTGTGACTGCTATTCTCTGTTCTGTGCAATGCCGCTGAGTGGATAGCTTCTTGCTGTGGCTCCTCGAAGGACAGGGTAACAGCAGGATGACAAAACCAGTGTAAAGGGCAGAAAGTGTGGACAGTCTCTATGGATGAAACAACATCCAGTCAAAATCCTCCCTAATTCCTCTGGACAGAAGAGATGCCCAAATTTCCCCTCCACCTTATTTATCTCTGAAGTGTATTTACTTGCAGCACATTGATCTGTGTTGCTCTGTACTTGTTATAATGATGACTTGTCCGAAAACTCCTTGTTGGGAAGTTGGATGATGTTTGACAGCAGACAAGTGCTGCAGTCGCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238670 lncRNA upstream 6776 20055289 ~ 20061984 (+) True G176346
TU238611 lncRNA upstream 154098 19911836 ~ 19914662 (+) True LOC120545241
TU238598 lncRNA upstream 162637 19883987 ~ 19906123 (+) True G176289
TU238605 lncRNA upstream 175981 19888869 ~ 19892779 (+) True G176292
TU238595 lncRNA upstream 199213 19867818 ~ 19869547 (+) True G176287
TU238655 lncRNA downstream 10021 20079851 ~ 20087641 (+) True G176335
TU238681 lncRNA downstream 19276 20089106 ~ 20090858 (+) True G176357
TU238769 lncRNA downstream 167697 20237527 ~ 20241216 (+) True G176410
XR_005636708.1 lncRNA downstream 367341 20437171 ~ 20440340 (+) False LOC120545553
TU238842 lncRNA downstream 367341 20437171 ~ 20440566 (+) True LOC120545553
XM_039779817.1 mRNA upstream 18537 20041803 ~ 20050223 (+) True traf2b
XM_039779815.1 mRNA upstream 20532 20037864 ~ 20048228 (+) False traf2b
XM_039779816.1 mRNA upstream 20532 20038258 ~ 20048228 (+) False traf2b
XM_039778837.1 mRNA upstream 40330 20020957 ~ 20028430 (+) True bspry
XM_039779962.1 mRNA upstream 98648 19964300 ~ 19970112 (+) False LOC120545547
XM_039779248.1 mRNA downstream 98097 20167927 ~ 20170745 (+) True bbln
XM_039779813.1 mRNA downstream 111915 20181745 ~ 20236007 (+) True dnm1a
XM_039779990.1 mRNA downstream 192945 20262775 ~ 20266809 (+) True hspa5
XM_039779981.1 mRNA downstream 207457 20277287 ~ 20425401 (+) False rgs3a
XM_039779982.1 mRNA downstream 207458 20277288 ~ 20423458 (+) False rgs3a
unassigned_transcript_963 other upstream 551454 19517235 ~ 19517306 (+) True trnac-gca_32
TU238450 other upstream 681318 19380277 ~ 19387442 (+) False LOC120545529
TU238143 other upstream 1344975 18676044 ~ 18723785 (+) True srsf9
TU238138 other upstream 1382032 18676044 ~ 18686728 (+) False srsf9
TU238926 other downstream 876854 20946684 ~ 20947055 (+) True G176526
TU239244 other downstream 2209050 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 2426583 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 2462078 22531908 ~ 22537337 (+) False G176870
TU239589 other downstream 2936437 23006267 ~ 23008812 (+) False klhl8

Expression Profile