RNA id: XR_005636609.1


Basic Information

Item Value
RNA id XR_005636609.1
length 430
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC120544955
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 2405775 ~ 2406868 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAATCCCATGAAGAAGAGCTGTGGCGGCCATAGCAGTAGAAGTAGAGCCAGGACAGGACAGCGGCATGGCTGACCATCAGGAGGCACAGTTACAAAACGCTGCCAGGCGGGTGGTAGCCTTGTTAAGGAGTGCCCTGGATAATGAAGCTGAACCATCTTCACAAAACCTCTCCCAGGCCTATTCAAATGTGGAAAAGACTTCAGGATGGACCAGGGAGACAGATGCAAACAGCGGACGAGCTTGAGAGAGATTGAAAAACAGGAGAGGACTGTCATTTGCCTACTGGACAGGCCCATCACCTCAACAGGGAGATGGATTTATGCTTCAAATTGAATTTGACCATCATTGTGGAGCGCACTATGGTAGCAACATCACATGTGCATCATTCGTGTTTTCAAGATTAGAATACTCCGGTGCTCAAAGTgagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233388 lncRNA downstream 63744 2341626 ~ 2342031 (-) True G172235
TU233382 lncRNA downstream 75805 2329685 ~ 2329970 (-) True G172231
TU233317 lncRNA downstream 308611 2090423 ~ 2097164 (-) True G172180
TU233288 lncRNA downstream 315796 2089713 ~ 2089979 (-) True G172151
TU233287 lncRNA downstream 322533 2082808 ~ 2083242 (-) True G172150
TU233440 lncRNA upstream 242590 2649458 ~ 2729174 (-) False G172283
TU233441 lncRNA upstream 242590 2649458 ~ 2655894 (-) True G172283
TU233445 lncRNA upstream 402106 2808974 ~ 2809467 (-) True LOC120545025
XR_005636620.1 lncRNA upstream 402205 2809073 ~ 2809530 (-) False LOC120545025
TU233454 lncRNA upstream 465988 2872856 ~ 2873112 (-) True G172295
XM_039780463.1 mRNA downstream 125964 2253897 ~ 2279811 (-) True dcp2
XM_039780448.1 mRNA downstream 152820 2179488 ~ 2252955 (-) True LOC120545833
XM_039780032.1 mRNA downstream 246724 2145367 ~ 2159051 (-) True hmgcs1
XM_039780033.1 mRNA downstream 247414 2148495 ~ 2158361 (-) False hmgcs1
XM_039780446.1 mRNA downstream 332669 1948903 ~ 2073106 (-) True tln1
XM_039780568.1 mRNA upstream 62307 2469175 ~ 2807464 (-) False dcc
XM_039780567.1 mRNA upstream 62307 2469175 ~ 2807464 (-) False dcc
XM_039780566.1 mRNA upstream 62307 2469175 ~ 2807464 (-) False dcc
XM_039780565.1 mRNA upstream 62307 2469175 ~ 2807464 (-) True dcc
XM_039780659.1 mRNA upstream 761758 3168626 ~ 3246890 (-) False mbd2
TU233144 other downstream 803619 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 1234986 1170203 ~ 1170789 (-) True G171868
TU233470 other upstream 577954 2984822 ~ 2985260 (-) True G172311
TU233826 other upstream 1479720 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 1734985 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 2363949 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 2443080 4849948 ~ 4897357 (-) False odf2a

Expression Profile