RNA id: XR_005636707.1


Basic Information

Item Value
RNA id XR_005636707.1
length 807
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC120545526
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 1255164 ~ 1256010 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGGAGCGGACACACGCGCGTGCTTCCACGCACACGCTTACGTACTGGTAGAGGGCCCCATCTAGAGGTAGAGGGCCCCATCTAGAGGTAGAGGGCCCTATCTAGAGCCAGAACGGAGCAGCTGAGTCCAGCTAGTGTTCAATGAAGCGCCAGGCTCGACATTAACATCAGTGGTGGaacaagtattcagatcctttgctTCAGTAAGAGTAGgcctactaataccacactgtaaaaatactctgtgaAAGTAAAGGCCTGCATAaaaaattttacttaagtaaaagtatgtaagtatcataaggaaaatgtagcctacttaaagtattaaaagtaaaagtaggctactGGATGTAGAAAAACCCTCCCAtgttagaaagtgtaaaggatccaaccagttgtgtgtttaattctTACAATTGACCTTTGTAGAAAATCATACAGGCTAAATATTTGACCCAATGTCTGGACTTTACGTATTATATTTAGGTTAGGATTATACTTACTCATACCCACTACAATAGACATCCACTGAGATGGGGTAAAGTGTCTGAATATTCCCACTAATGGTGGTTTGAACCAGGCCTGATGATGTGGGGTGTTGCAATTAAATAGCACCTTAAACCACTATAGGATGAAGTAGCCTATACACGGTTTAAATCTCCTGTATACTGTTCATGTTCCTACATAACTTCTGTCCACATGATGTCCTCAGGGAGTGAAAACATGTGTATGTTGCTTCTTACCTACATGATATATTCACATTACATTTGACTTTGTACAGAATATAAAGTATATTATACTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636741.1 lncRNA downstream 47811 1204231 ~ 1207353 (-) True LOC120545753
TU232976 lncRNA downstream 61252 1192570 ~ 1193912 (-) False G171886
TU232974 lncRNA downstream 69362 1184173 ~ 1185802 (-) True G171886
TU232911 lncRNA downstream 214113 1040798 ~ 1041051 (-) False megf10
TU232906 lncRNA downstream 216354 1038339 ~ 1038810 (-) True G171848
TU233051 lncRNA upstream 77813 1333823 ~ 1371734 (-) True G171949
TU233066 lncRNA upstream 113236 1369246 ~ 1373758 (-) True G171960
TU233063 lncRNA upstream 122232 1378242 ~ 1457614 (-) True G171959
TU233065 lncRNA upstream 122232 1378242 ~ 1457614 (-) False G171959
TU233062 lncRNA upstream 195197 1451207 ~ 1457614 (-) False G171959
XM_039778834.1 mRNA downstream 71261 1174528 ~ 1183903 (-) False LOC120544936
XM_039780306.1 mRNA upstream 136754 1392764 ~ 1423159 (-) False syk
XM_039780304.1 mRNA upstream 136754 1392764 ~ 1423159 (-) True syk
XM_039780305.1 mRNA upstream 136754 1392764 ~ 1423041 (-) False syk
XM_039779188.1 mRNA upstream 250544 1506554 ~ 1522474 (-) True reep5
XM_039779782.1 mRNA upstream 399338 1655348 ~ 1715953 (-) True nrg1
TU232928 other downstream 84375 1170203 ~ 1170789 (-) True G171868
TU233144 other upstream 340506 1596516 ~ 1602156 (-) True G172032
TU233470 other upstream 1728812 2984822 ~ 2985260 (-) True G172311
TU233826 other upstream 2630578 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 2885843 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 3514807 4770817 ~ 4771303 (-) True G172920

Expression Profile