RNA id: XR_005636742.1


Basic Information

Item Value
RNA id XR_005636742.1
length 1126
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id LOC120545780
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 22537950 ~ 22540359 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACGGGGAGGAGACAGCTCTCATTTCATTTCACCCTATCACTTCATCACTATCTGCAAGCTTTGGTGAAGGACTTGTAGAATACCCCAATATTCTTGAGCACCACAAAATATACCTAATGATAGTGATATGCGACCACTATCTTTAGCCatgaaacatttaaatgtatgtagttgtttttttttaagagtttttaTTATAAAGGTTACTTATCCTTTATTTAATTGTACAGTCAATCAGCAACGGGAAATGAGGGATGACATTCCTCCAGAGATTTTAAACTGGATGTTGTGGTTACTTGCTGCATCTTCTACCTTCTACCTTGGGCTTAGTGGTCTATCATTTTGTTTGCCACCTGTCatcctctttgacagtgataaGCATTATTAAATAAACACCTACTCTACACCTACTGTACCTGCCTAACACTGGGCTACATGATTGACAAAGAGATCTAAAGTGTGAAAGGGGGGCCCAGCTACCACTCAACAATATATAGGGTTTGCTGTGCTGGCTCCACAATGGTGGAAGGAGCTCCCACATCAGGACAGCAGAAACCCTACACATCTTCCGTCGCACTCACCTGTTCAGACTGCATCTTGGCCAattaaaagatatataacagtTTTTGCTTATTTGAGGGATTGTATGTACTTGCATGATTCTTGCTATTTTTGGGTGGTATCTTCATGATTGAATGCAATTATTGTCAGTCACTTTGAATAAAAGCATAATTTACATGAATAATGTAAATGGAATCCTATAATGTACTATTAGGAAATTGTTAATGGCATAGTGTACTATGACTTATGTACTATGGCttaagtattgtgatgatacTGGGttttagtttcctgttttattttgaaggttaaCTCCTTGTGTGTCATGTCTGgctttacttcctgccttgtgggTTTTTGTAAAGTCTGttccctgttttatttttaaggtTAACTCCTCATGTGCCTGCTCTGCCCTCATTTATTCCACCTGTGTTTATTTAGCATTGTGTATTTGATCCCCGGCCTCATTGTAAGTTCGTCTTCCTTGATGTTTGGAGATTTTGTAAGCTAGATGTTCCTGCCTGTTTTGTAGCCTTTTGATTATTAAATTGTTTGACCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239381 lncRNA upstream 3655 22531908 ~ 22534295 (+) True G176870
TU239330 lncRNA upstream 60235 22474365 ~ 22477715 (+) True LOC120546009
XR_005636771.1 lncRNA upstream 62126 22474380 ~ 22475824 (+) False LOC120546009
TU239312 lncRNA upstream 135886 22400570 ~ 22402064 (+) True G176810
TU239311 lncRNA upstream 137622 22399609 ~ 22400328 (+) True G176809
TU239409 lncRNA downstream 18312 22558671 ~ 22560599 (+) True G176890
TU239419 lncRNA downstream 104677 22645036 ~ 22646108 (+) True G176898
TU239420 lncRNA downstream 105883 22646242 ~ 22648263 (+) True G176899
TU239421 lncRNA downstream 108722 22649081 ~ 22649318 (+) True G176900
TU239422 lncRNA downstream 109026 22649385 ~ 22649840 (+) True G176901
XM_039779438.1 mRNA upstream 13545 22496714 ~ 22524405 (+) False LOC120545252
XM_039779440.1 mRNA upstream 13545 22515469 ~ 22524405 (+) False LOC120545252
XM_039779439.1 mRNA upstream 13545 22522848 ~ 22524405 (+) False LOC120545252
XM_039779313.1 mRNA upstream 66402 22439803 ~ 22471548 (+) False nedd4l
XM_039779284.1 mRNA downstream 271759 22812118 ~ 22814146 (+) True esm1
XM_039779009.1 mRNA downstream 283941 22824300 ~ 22892523 (+) True arhgap24
XM_039779010.1 mRNA downstream 327153 22867512 ~ 22892523 (+) False arhgap24
XM_039779011.1 mRNA downstream 338424 22878783 ~ 22892523 (+) False arhgap24
XM_039779012.1 mRNA downstream 343094 22883453 ~ 22892523 (+) False arhgap24
TU239380 other upstream 613 22531908 ~ 22537337 (+) False G176870
TU239368 other upstream 13582 22496413 ~ 22524368 (+) True LOC120545252
TU239244 other upstream 255787 22278880 ~ 22282163 (+) True G176753
TU238926 other upstream 1590895 20946684 ~ 20947055 (+) True G176526
unassigned_transcript_963 other upstream 3020644 19517235 ~ 19517306 (+) True trnac-gca_32
TU239589 other downstream 465908 23006267 ~ 23008812 (+) False klhl8
TU239701 other downstream 642314 23182673 ~ 23184262 (+) True G177094
XR_005636689.1 other downstream 900631 23440990 ~ 23458605 (+) True hnrpkl
TU239996 other downstream 1183141 23723500 ~ 23727242 (+) True rpl37
XR_005636817.1 other downstream 1183807 23724166 ~ 23724245 (+) True LOC120546142

Expression Profile