RNA id: XR_005636762.1


Basic Information

Item Value
RNA id XR_005636762.1
length 437
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC120545949
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 3159271 ~ 3167356 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cttagagcccaaaaggacgcagaattggcttattttctcctgaaccgGGATTCCTGTTTCAATCTTGTAACAGCAGCTCTGTTCGTGCTCTGCATCAGAAAACACTGGCTGAGGTTAAACTGGAGACACGAAGCTGCTGCCGGTCTCTTCACTTGCTGGTCTTTGTCAGCCTTCCCACCATGTGTGATAACTGCCCCTTCCCTAATGTGCTGCAACCGTGTCCAATTGTCTcccctgtgtctgtgtatatatattaggggtgacCCCGAATAGTTGAATATTCGACTATTCGATGCTTCGATCGAAGGAGCCTAATTCGACTGCCAATCTCCCAGTCAAATCTTCGCAGAGGCATTATGAAAAGCACAATGTCAGATTTTAGATATTTACTACCCGTTTTCTCCCAGTAAGTTAAGCCTATTATatgaatatcaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233504 lncRNA downstream 6515 3152061 ~ 3152756 (-) True G172342
TU233475 lncRNA downstream 171055 2987937 ~ 2988216 (-) True G172313
TU233474 lncRNA downstream 171665 2987209 ~ 2987606 (-) True G172312
TU233454 lncRNA downstream 286159 2872856 ~ 2873112 (-) True G172295
XR_005636620.1 lncRNA downstream 349741 2809073 ~ 2809530 (-) False LOC120545025
TU233616 lncRNA upstream 158410 3325766 ~ 3327234 (-) True G172432
TU233624 lncRNA upstream 190769 3358125 ~ 3358520 (-) True G172439
TU233628 lncRNA upstream 195391 3362747 ~ 3363219 (-) True G172443
TU233629 lncRNA upstream 196161 3363517 ~ 3370798 (-) True G172444
TU233656 lncRNA upstream 292989 3460345 ~ 3463100 (-) True G172468
XM_039780568.1 mRNA downstream 351807 2469175 ~ 2807464 (-) False dcc
XM_039780567.1 mRNA downstream 351807 2469175 ~ 2807464 (-) False dcc
XM_039780566.1 mRNA downstream 351807 2469175 ~ 2807464 (-) False dcc
XM_039780565.1 mRNA downstream 351807 2469175 ~ 2807464 (-) True dcc
XM_039780463.1 mRNA downstream 879460 2253897 ~ 2279811 (-) True dcp2
XM_039780659.1 mRNA upstream 1270 3168626 ~ 3246890 (-) False mbd2
XM_039780657.1 mRNA upstream 1270 3168626 ~ 3246887 (-) True mbd2
XM_039780656.1 mRNA upstream 1271 3168627 ~ 3246887 (-) False mbd2
XM_039780658.1 mRNA upstream 1271 3168627 ~ 3246884 (-) False mbd2
XM_039780653.1 mRNA upstream 110193 3277549 ~ 3281952 (-) True LOC120545955
TU233470 other downstream 174011 2984822 ~ 2985260 (-) True G172311
TU233144 other downstream 1557115 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 1988482 1170203 ~ 1170789 (-) True G171868
TU233826 other upstream 719232 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 974497 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 1603461 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 1682592 4849948 ~ 4897357 (-) False odf2a
XR_005636625.1 other upstream 1682592 4849948 ~ 4897357 (-) False odf2a

Expression Profile