RNA id: TU245649


Basic Information

Item Value
RNA id TU245649
length 452
RNA type TUCP
GC content 0.47
exon number 4
gene id G181196
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 47081 ~ 48753 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggtcgacgcactttcacctgcaccggccaggaaacgggagaaagctttgaagtgggacgtatgaagttatgtccacaactacgagggtgtgacttaagtacccgttgagctgcatcacagctgcactatgtgcatggacctgtgccagtcagcacatcactcacctgtgtgcagaggacaggcagcagtagcacaaaccaagaagggtgcacaaccaggcctgggagagaaaattactgatgtccacaaaaccaaatcagagaaggagcatactatacaaagacaacagtggagagttcctggatcggtctgtcctcaaagtgccagagatctacaaggacttcacccttttctgcaccatcagcgtataatcaaagtgataaaagagagaacaaattattgttttctctgttgacatgaataggtgcctgtaatgtctgtccatatattca

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04142 Lysosome
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636858.1 lncRNA upstream 7183 55936 ~ 57849 (-) True LOC120546303
TU245651 lncRNA upstream 7183 55936 ~ 57849 (-) False LOC120546303
XR_005636860.1 lncRNA upstream 86070 134823 ~ 135586 (-) True LOC120546305
TU245681 lncRNA upstream 91437 140190 ~ 140396 (-) True G181223
TU245684 lncRNA upstream 99470 148223 ~ 148500 (-) True G181226
XM_039782625.1 mRNA downstream 7448 37505 ~ 39633 (-) True LOC120547155
XM_039781144.1 mRNA upstream 229669 278422 ~ 286568 (-) False LOC120546293
XM_039781145.1 mRNA upstream 229669 278422 ~ 286568 (-) True LOC120546293
XM_039781147.1 mRNA upstream 229669 278422 ~ 282915 (-) False LOC120546293
XM_039781143.1 mRNA upstream 229669 278422 ~ 282158 (-) False LOC120546293
XM_039781148.1 mRNA upstream 487236 535989 ~ 550593 (-) True serinc1
unassigned_transcript_965 other downstream 37532 9478 ~ 9549 (-) True trnad-guc_17
TU245660 other upstream 9223 57976 ~ 79310 (-) True G181206
TU245770 other upstream 590057 638810 ~ 639513 (-) True G181297
unassigned_transcript_996 other upstream 779710 828463 ~ 828534 (-) True trnad-guc_18
unassigned_transcript_1000 other upstream 788421 837174 ~ 837245 (-) True trnad-guc_19
unassigned_transcript_1002 other upstream 793201 841954 ~ 842025 (-) True trnad-guc_20

Expression Profile