RNA id: TU245709


Basic Information

Item Value
RNA id TU245709
length 213
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G181243
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 350497 ~ 350709 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cccggtctcatggaagttcgtgtgaatgtgacgttatttgaatctattgatacgtgttcacggagacgtttttgtcattttttacgtggtggacaacacgaaaatgtgaagtaatgtatttcaatgggaagcatattccGTGGCCACAGAAcaaaattgtagggagtaatataaaaagccgaaaatccgcgtagggaggttggtcggggtggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245692 lncRNA downstream 130325 219778 ~ 220172 (-) True G181233
TU245684 lncRNA downstream 201997 148223 ~ 148500 (-) True G181226
TU245681 lncRNA downstream 210101 140190 ~ 140396 (-) True G181223
XR_005636860.1 lncRNA downstream 214911 134823 ~ 135586 (-) True LOC120546305
XR_005636858.1 lncRNA downstream 292648 55936 ~ 57849 (-) True LOC120546303
TU245765 lncRNA upstream 276575 627284 ~ 627736 (-) True G181292
TU245769 lncRNA upstream 284147 634856 ~ 635203 (-) True G181296
TU245772 lncRNA upstream 301787 652496 ~ 652799 (-) True G181299
TU245799 lncRNA upstream 339516 690225 ~ 690483 (-) True G181326
TU245803 lncRNA upstream 371957 722666 ~ 722880 (-) True G181330
XM_039781144.1 mRNA downstream 63929 278422 ~ 286568 (-) False LOC120546293
XM_039781145.1 mRNA downstream 63929 278422 ~ 286568 (-) True LOC120546293
XM_039781147.1 mRNA downstream 67582 278422 ~ 282915 (-) False LOC120546293
XM_039781143.1 mRNA downstream 68339 278422 ~ 282158 (-) False LOC120546293
XM_039782625.1 mRNA downstream 310864 37505 ~ 39633 (-) True LOC120547155
XM_039781148.1 mRNA upstream 185280 535989 ~ 550593 (-) True serinc1
XM_039781150.1 mRNA upstream 202631 553340 ~ 572016 (-) True slc35f1
XM_039781155.1 mRNA upstream 227635 578344 ~ 591833 (-) True nus1
XM_039782629.1 mRNA upstream 258949 609658 ~ 610988 (-) True LOC120547160
XM_039781157.1 mRNA upstream 260519 611228 ~ 625943 (-) True LOC120546300
TU245660 other downstream 271187 57976 ~ 79310 (-) True G181206
TU245649 other downstream 301744 47081 ~ 48753 (-) True G181196
unassigned_transcript_965 other downstream 340948 9478 ~ 9549 (-) True trnad-guc_17
TU245770 other upstream 288101 638810 ~ 639513 (-) True G181297
unassigned_transcript_996 other upstream 477754 828463 ~ 828534 (-) True trnad-guc_18
unassigned_transcript_1000 other upstream 486465 837174 ~ 837245 (-) True trnad-guc_19
unassigned_transcript_1002 other upstream 491245 841954 ~ 842025 (-) True trnad-guc_20
unassigned_transcript_1005 other upstream 497053 847762 ~ 847833 (-) True trnad-guc_21

Expression Profile