RNA id: TCONS_00006940


Basic Information

Item Value
RNA id TCONS_00006940
length 4997
RNA type mRNA
GC content 0.47
exon number 15
gene id XLOC_003546
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 30663300 ~ 30728241 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCAGAGAGCGGAATACTGTCTGTAGAGGCTCATCATGGCTGTGCTGGAGGTCAGAGAGGAAGAGTGATGTGTGGTGCTGATGCTGGGATCCAGACGGGCGGGGAGCAAAACCAGGGAGCATCCAGCGTCATTAGCAATGGTGGAGAGAGGTTTAACGAGTATCCTGACGGAGGAAAAGGGGTTATGAACCTCCATACCTACATAAGAAAATGAGCAGATAAATGGCTCATTTAAGCTGGGCGCTGCCAGAGTGCTCTCAGGGTTGCAGTGCCTAGCGCCAGCTCTGCAGGACAACGCCAACATGAACGGCACTGCAGAGCAGCAGGACATTCTGCCCCCTCATTGCATGGTCAAAGATCGATGGAAAGTGCTGAAGAAGATCGGAGGAGGAGGGTTTGGGGAAATCTACGAGGCGCTGGACCTGCTGACTCGAGAGAATGTGGCGTTAAAAGTGGAGTCAGCGCAACAGCCCAAACAAGTCCTGAAGATGGAGGTAGCAGTTTTGAAGAAACTGCAGGGTAAAAACCACGTATGTAAGTTCATAGGCTGTGGGCGAAACGATAAATTCAACTATGTCGTCATGCAGCTGCAGGGCAGAAACCTGGCAGATCTCAGGCGAAGTCAGCCTCGCGGCACCTTTACCATGAGCACAACCCTCCGCTTGGGAAAACAGATCCTCGAATCCATAGAAGCCATTCACTCCGTTGGCTTTCTCCATCGAGACATCAAACCGTCAAATTTTGCCATGGGAAGGCTGCCTTCAACATTCCGGAAATGTTATATGCTAGATTTTGGGCTCGCAAGACAGTATACAAACACCAATGGAGAAGTCAGACCGCCTAGAACTGTTGCAGGATTTCGAGGGACTGTTAGATATGCATCTGTGAATGCACATAAAAACAAAGAAATGGGTCGCCATGATGACTTATGGTCATTGTTTTACATGCTGGTTGAGTTTGCTGCTGGGCAGCTGCCATGGAGGAAAATCAAGGACAAGGAGCAAGTGGGTCAGATTAAGGAGCGCTACGATCATAGGATGCTTCTTAAACACATGCCGTCAGAGTTTAATGTCTTCCTGGAGCATGTTTTAGCCCTTGACTACTATACCAAACCAGACTATCAGCTCCTGATGTCAGTGTTCGAGAACAGCATGAAGGAACGCATCATCACTGAAAACGAGCCCTATGATTGGGAGAAAAGTGGGACGGAGACTATTATCTCTGCTACCACACCGACAGCAGCTCAGCAGAACACGAGACCCACAGCCGCGATGGTCGGGGTTATAAATGTGACCCCGATGCCAGGTGACCTTCCAAGGGAAAACACAGATGATGTTGTACAGGATGAGCACCTTAGTGACCAGGAAAACGCCCCTCCAATTCCCTCTGGACGGCCAGTTGATGGCAGCCAGATGCCCACAGATGCAGACGGATGGGAGGAGACAGACTTCAACCGCAACAAACTCAGGATTAACCTTGGAAAGGGAGGTCAAGAAGAGGACGGTAGCCGGGGTGTGTGTCCTGTTTCGCCACAAAGGGGAGGTTTGGACTCTCCAGGGATGCAGGTTCACTCGATCAGGTACCGACGGGTCAACAGTCCTGAATCTGATCGCATGTCTGCTGCTGATGGACGGGACGGTTACGGCCAACGCTCTCGAATGGACATTCTGGGTTCTCCATCTCGTCACGTTTACTCCTCTCAGCCCGCTCAGATGCTCTCGGTGGACGGTTGCAGAGGCCGTAATGAAGCCTCTGCATCGGTGGACCAGGAAGCCCACAGCAATGCCTTCATCCGCTCAGTCCCGCTCGCAGAAGAAGAGGACTTCGACAGCAAAGAGTGGGTGATCATAGACAAGGAAATGGAGCTCAGAGACTTCCACCACCTTCCAGGAGCCGAACCTACCACTTCCGGCACGACGGATGAGGAGCCGGAGGAATTACGCCCTCTGGAGGAAGGAGATGATCGGAGGAGACACAGAGGGAACGATCCATCCGTCAGAACCAAAACGTCCCATGGAGAACGGACTACACGAGGGATGCTACCACTGACGGAGGAAGAGACATCCAGGAGGAGTGGGAAAGGCCAGTCCACGTCAATGGAGAGCCCTGCGCAGTCACCCTGTCACTCGCTGCCCTCCGGACGGCCCCGGCGGAGAGATGCAGATAACAACGGACCTCAGAGACAGgccCCAACCCCAAGTGAGCCTCTATTATCACCCACTGACTACAGGACTAAATCCCCATCCTCTGAGAAGGAGATGTTCCATATACTTCCAAAGCTGCAGGCTAAGAGAGCCGACTTCCTTACAGTCATGCTTACAGGAAGCCTTCACCAGCGCCGGGCCTTCACAGCCACACCGCCTGAGACACAAGATGAGGGGCCAAGAGATGATGACGTCACAAAGAGCGAATCAAGCAGCGGAGCAAGTGAAAAGAGTACTGAACGTAGTCAAGATGGGGCTCCATCTACCTTGGTTGCCGATGATCCACAAAAAGAGTCAAAAGAACCAGGTTCGGTTGCTGATGTAGATCCTGACCAAGAAGATGTCTCAAACAcccttgttttgttttcaccagGAGACACGAAGAAGTCACCAAATGCTATAATCAGGGCTGAAGTTGATCAGGGTGTGGGGAGTTTTGATGCCCCTCAAAATGAAAATCAAGGTCAATCAGAGGTCCAGAAACAAGAGGACATCAAGCAAGCAGAGAGACCTATAGATGGAAGGCAAGCCGATGTAACTGGGTTTGACCCATTCATACAGTCATCTAAACCAGTGGTAACAATCTCAACAACTCCAGTGGCCTCTGCCTCAATTGCATCACCCCTTTTCTCCAAAGTGGAGCAAACTTTTGTACACATTGCAGAGACAACCCATCTGAATGTTATGTCTTCCAGTAGTGGACAGGTTCTGGAAGTTTTACAGGAGGTTGAAGGCAAATTACAGTCCAAACTGACAAAAGACAAACCAGAGCCAGGAGGAGGTGCAGCTTGTGTCCAGTCTGAAGTCATCTCTCAGATTCTTACAGAGGAATCTCAGGTACCTAATGTCCTAGATGGGTCTTTGCCAAATGAATCAACTGTAAAGCAAGAAAATCCTACGGATCCTCTATGTGTACAGTCTATGGAACCCATCATTCAAGATTCAACAATTGACTCCAATCAGGACGAAAAACCAAAAGAAGAAATTCAAGAGGGGAGCACAGTACCTGATATTGTTTCTAAACCTCCAAGGCCAAGAAGCAGAAGTCGGATTCCTATTCTAGTCCCGGAAGAGGAGCCAGGATCTGAGAAATCCCTGTCCACCAAAGAACGAATGCGTAGAAGAGTCATGCAGCAAGACCTGGCCCGTCAAGTTGTGGAAAGACATCGTCAGGGTCGCTGGATAAGACTGAATTCCAGGACATCATCTTCGTTATCTTCTGGAGATGAGCCCAAGAGACCTTCAGAGACTCTTTCTACTACAGGCTCGGAAGAAGATGTTCTTGAATCTGATGATTCCCTAAACAAGCTCAAGAAGGAGGCTGAGGAAAAGCACCAAACTGGCTGGCACAGCAGGATCCCTCGACCAGTCACCCCAATAAGGAAGCCTTCGACTAAACTAGTTGTTGCACCTCCTTTGAGCCAACCTGAAGCTGCAAAATTAGAACAAAAAGCAAGCAATGGCCCAAAAGTACAGTCACAATCAGGATCAAGTGCTCCAGCATTTCATGCAAGATCAAAATCAACTCTGTCCCATTCGACCATGCCAAGTGGAAGCAATTGCATGCCTCTCTCCTGTATTCCTGCAGCATCCCGCCGCAGCTTAAGCACCGCAAACTGCACTTTCTCTTCAGCCCGTATAGCTAGTCCCTCGCCCCATAGGCTACACTTGCGAACTGCTGTTATTGAATCCCGCAAGCAACCGTTTGCCCTCCGAACCACTGTGGAGCTCCCATTGAAGTCTAGGACTACTACTTGCAGCAATCCTGCAAAGGACACCAAACCATCACCAAACAAAGCCACCAACACAACTGTCAGGAATCGAACCAAAGCTTCTACTCAATCAAAAAACACAGTTCCCGCTAAAAAGGAAAAAAGCACAAGCAACAATGCAGCTGCAGCCAGATAAGACACTGTGGCTGCTCTATACTGGATTTCTTTCTTCTCAATTACTTGAACATGTCGCCTCAAAATGTCACCCGGCCTATTGACCAAAATTTATCTTTTCAGTTGGTTTAACCTTCTTACTAATGGATCATGCAAATTGTGGATCCTACACCAAATCATTTTATGTTGTACTATAAAATCAAAACCATGTAAAACTTTCCCATTAAGGAACGAGTCTTGGAATATAAAGGAGGAAATGTCACATTAGCTTACATGGTGCTATACTGTATACGTGTCGTTCTGTTGTGCATATTCCATTTAATATATGGTTTTTGAAGGTGTACCTTAATATTAGTTAGACGCCAAGTTGTCTTTGACCCTTGACACGCAATGATGAGGAATCGAGTCATCATCTGACAGAATCATACAGTATAATACCTCTATTTAACCAGCACAAATGAATATAAACCACCAGACACACAGAAAGTTACGAAATCTGCCACATATTCATGACAAATTGCACAAATTTTCTCTGGTCTGCAGCTCGGCCCTCTTTGTAAACCTTGTGATGATGGGCATGCCTTGTCTTTAGCTTGTTACAAGTGTTTGATGAAACTGCTGTATGCTTGTACATATTCTTTTCAGTATTTCTCGCAGAGacttctttattttttatcaggCAAAGGAAATGGTGGATAAGTATTAGGGTTTTCATTTTGTTAAAGGAGTTTACTGTGGGTTCTACTCAGAGTCTTGTTTTTTTAAGCATGGCAGAAATCACACACTCATAACTGTCATTACGGATTATTTCTAAATGAACAATTCccactttttttgcttttattacaaTGGTGAGATGTTGGTCAAGATTTTATTGGAACAAAGAgcataaaagaatcttaaaatt

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100609-4 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human TTBK1 (tau tubulin kinase 1).

Ensembl:

ensembl_id ENSDART00000161662

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006926 lncRNA upstream 363246 30298703 ~ 30300054 (+) True XLOC_003541
TCONS_00006919 lncRNA upstream 409743 30252957 ~ 30253557 (+) True XLOC_003537
TCONS_00006918 lncRNA upstream 409745 30252940 ~ 30253555 (+) False XLOC_003537
TCONS_00006917 lncRNA upstream 411364 30250051 ~ 30251936 (+) True XLOC_003536
TCONS_00008633 lncRNA upstream 559463 30091155 ~ 30103837 (+) False XLOC_003534
TCONS_00006953 lncRNA downstream 319904 31047854 ~ 31055288 (+) True XLOC_003551
TCONS_00008634 lncRNA downstream 477036 31204986 ~ 31212769 (+) True XLOC_003554
TCONS_00008635 lncRNA downstream 477533 31205483 ~ 31209887 (+) True XLOC_003555
TCONS_00006957 lncRNA downstream 508861 31236811 ~ 31240622 (+) True XLOC_003556
TCONS_00006958 lncRNA downstream 557034 31284984 ~ 31320539 (+) True XLOC_003557
TCONS_00006939 mRNA upstream 1546 30647545 ~ 30661754 (+) True XLOC_003545
TCONS_00006938 mRNA upstream 20654 30636351 ~ 30642646 (+) True XLOC_003544
TCONS_00006937 mRNA upstream 27154 30614485 ~ 30636146 (+) True XLOC_003543
TCONS_00006936 mRNA upstream 132194 30513656 ~ 30531106 (+) True XLOC_003542
TCONS_00006935 mRNA upstream 334245 30321116 ~ 30329055 (+) True XLOC_003540
TCONS_00006943 mRNA downstream 1795 30729745 ~ 30742966 (+) True XLOC_003547
TCONS_00006944 mRNA downstream 16316 30744266 ~ 30747836 (+) False XLOC_003548
TCONS_00006945 mRNA downstream 16441 30744391 ~ 30747826 (+) True XLOC_003548
TCONS_00006946 mRNA downstream 89993 30817943 ~ 31024912 (+) False XLOC_003549
TCONS_00006947 mRNA downstream 89993 30817943 ~ 31026335 (+) False XLOC_003549
TCONS_00006893 other upstream 1091772 29566747 ~ 29571528 (+) True XLOC_003523
TCONS_00006890 other upstream 1311079 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006865 other upstream 3142727 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006853 other upstream 4048713 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006838 other upstream 4585239 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006949 other downstream 244084 30972034 ~ 30997832 (+) False XLOC_003549
TCONS_00006950 other downstream 246821 30974771 ~ 30974892 (+) True XLOC_003550
TCONS_00006952 other downstream 287569 31015519 ~ 31024572 (+) True XLOC_003549
TCONS_00006967 other downstream 897221 31625171 ~ 31671413 (+) False XLOC_003561
TCONS_00006968 other downstream 918994 31646944 ~ 31668072 (+) True XLOC_003561

Expression Profile

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