RNA id: TU245759


Basic Information

Item Value
RNA id TU245759
length 396
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G181286
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 636983 ~ 637378 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agcgccatttattttaactactttctcaactaaagctgcctgtatctacatgctccaagtttgacAAACTTTGCATCCATTTTTTTTAGccgcgttaccacggagaccacaccgcACTCTAGCTTTTCGGCAAAGAtccgccctactttgcatctgattggctagaactcgtttcattgataggtggaagttcgatgattgattaaacccagcgcatcaaaaacaaatcccatgtggactttttaatttatttatttttcaaaaatattcatatgCCAGAAATCCGGCACCAGGCCCGATTACTTTCAACCCTGTGTTAGAGCTGCGTTCCTCTTATATGATTGGTATGTGAAATCAATTGACTTGAAAATATTAAACCGCAtgcaagttgttgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245757 lncRNA upstream 8931 627291 ~ 628052 (+) True G181284
TU245730 lncRNA upstream 37046 599696 ~ 599937 (+) True G181261
TU245714 lncRNA upstream 57786 531103 ~ 579197 (+) True G181247
TU245690 lncRNA upstream 430458 181125 ~ 206525 (+) True G181231
TU245686 lncRNA upstream 484898 151867 ~ 152085 (+) True G181228
TU245771 lncRNA downstream 15136 652514 ~ 652800 (+) True G181298
TU245778 lncRNA downstream 42038 679416 ~ 680263 (+) True G181305
XR_005636820.1 lncRNA downstream 228304 865682 ~ 867699 (+) True LOC120546155
TU245840 lncRNA downstream 243101 880479 ~ 880898 (+) True G181347
TU245854 lncRNA downstream 266384 903762 ~ 905192 (+) True G181357
XM_039781141.1 mRNA upstream 107336 510134 ~ 529647 (+) True hsf2
XM_039781142.1 mRNA upstream 107336 510138 ~ 529647 (+) False hsf2
XM_039781149.1 mRNA upstream 371297 258222 ~ 265686 (+) True gja1b
XM_039781160.1 mRNA downstream 11920 649298 ~ 650373 (+) True LOC120546301
XM_039782631.1 mRNA downstream 233703 871081 ~ 896358 (+) True LOC120547162
XM_039781869.1 mRNA downstream 271793 909171 ~ 928036 (+) True ppil4
XM_039781414.1 mRNA downstream 304473 941851 ~ 956304 (+) True LOC120546482
XM_039782292.1 mRNA downstream 490137 1127515 ~ 1141921 (+) True amd1
unassigned_transcript_992 other upstream 418837 218075 ~ 218146 (+) True trnam-cau_53
unassigned_transcript_991 other upstream 420378 216523 ~ 216605 (+) True trnal-uag_18
unassigned_transcript_990 other upstream 421144 215768 ~ 215839 (+) True trnam-cau_52
unassigned_transcript_989 other upstream 422682 214220 ~ 214301 (+) True trnal-uag_17
unassigned_transcript_988 other upstream 424469 212433 ~ 212514 (+) True trnal-uag_16
unassigned_transcript_993 other downstream 185422 822800 ~ 822872 (+) True trnav-cac_9
unassigned_transcript_994 other downstream 186948 824326 ~ 824398 (+) True trnav-cac_10
unassigned_transcript_995 other downstream 188477 825855 ~ 825927 (+) True trnav-cac_11
unassigned_transcript_997 other downstream 191416 828794 ~ 828867 (+) True trnaf-aaa_1
unassigned_transcript_998 other downstream 194321 831699 ~ 831772 (+) True trnav-aac_13

Expression Profile