RNA id: TU245778


Basic Information

Item Value
RNA id TU245778
length 229
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G181305
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 679416 ~ 680263 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGAGGCTGCCCTAGCATCACCagaagggagagatgaggaggagagggaaagcaaaagacaagCAGGGAGACAGAGGCCACTGGAACACTGGACGAAATGGATGTGTAACTGTGctgttcaattttttttgttgagatgaAGAAGGTGAATCAGCGTCAGTCTGCTTGCAGGAGAATATTCTGTGAGGAACTTTGCCCGCAACGTGCAAAGtcttGAAGCAACACCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245771 lncRNA upstream 26616 652514 ~ 652800 (+) True G181298
TU245759 lncRNA upstream 42038 636983 ~ 637378 (+) True G181286
TU245757 lncRNA upstream 51364 627291 ~ 628052 (+) True G181284
TU245730 lncRNA upstream 79479 599696 ~ 599937 (+) True G181261
TU245714 lncRNA upstream 100219 531103 ~ 579197 (+) True G181247
XR_005636820.1 lncRNA downstream 185419 865682 ~ 867699 (+) True LOC120546155
TU245840 lncRNA downstream 200216 880479 ~ 880898 (+) True G181347
TU245854 lncRNA downstream 223499 903762 ~ 905192 (+) True G181357
TU245858 lncRNA downstream 235525 915788 ~ 959465 (+) True G181360
TU245949 lncRNA downstream 466173 1146436 ~ 1146690 (+) True G181431
XM_039781160.1 mRNA upstream 29043 649298 ~ 650373 (+) True LOC120546301
XM_039781141.1 mRNA upstream 149769 510134 ~ 529647 (+) True hsf2
XM_039781142.1 mRNA upstream 149769 510138 ~ 529647 (+) False hsf2
XM_039781149.1 mRNA upstream 413730 258222 ~ 265686 (+) True gja1b
XM_039782631.1 mRNA downstream 190818 871081 ~ 896358 (+) True LOC120547162
XM_039781869.1 mRNA downstream 228908 909171 ~ 928036 (+) True ppil4
XM_039781414.1 mRNA downstream 261588 941851 ~ 956304 (+) True LOC120546482
XM_039782292.1 mRNA downstream 447252 1127515 ~ 1141921 (+) True amd1
XM_039782771.1 mRNA downstream 487819 1168082 ~ 1181768 (+) True rpf2
unassigned_transcript_992 other upstream 461270 218075 ~ 218146 (+) True trnam-cau_53
unassigned_transcript_991 other upstream 462811 216523 ~ 216605 (+) True trnal-uag_18
unassigned_transcript_990 other upstream 463577 215768 ~ 215839 (+) True trnam-cau_52
unassigned_transcript_989 other upstream 465115 214220 ~ 214301 (+) True trnal-uag_17
unassigned_transcript_988 other upstream 466902 212433 ~ 212514 (+) True trnal-uag_16
unassigned_transcript_993 other downstream 142537 822800 ~ 822872 (+) True trnav-cac_9
unassigned_transcript_994 other downstream 144063 824326 ~ 824398 (+) True trnav-cac_10
unassigned_transcript_995 other downstream 145592 825855 ~ 825927 (+) True trnav-cac_11
unassigned_transcript_997 other downstream 148531 828794 ~ 828867 (+) True trnaf-aaa_1
unassigned_transcript_998 other downstream 151436 831699 ~ 831772 (+) True trnav-aac_13

Expression Profile