RNA id: TU246202


Basic Information

Item Value
RNA id TU246202
length 357
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G181633
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 1945483 ~ 1949524 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TttattcacatttatttttgcttttagtGTGCTCACAGAAAATTTAGAACACCTTAAGCAGAGGAGTTTAATAGCAATTTTTTTGTAAGCAAAGTTACATTCCATCTCTAAGTCAAACTGGTCAAAGCTTCTCCAGTATttacaaaaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaaaaaaaaaaaaaaaaaaaaaatcgcagtGCCTCAACCGGATCGCAAGGGGTCGGTGCCGGGTCGCTGCAACAGCAGAGCAGCTGCTCATTAAAACAGCAGATGCTCATTAGTCCTGCAGATCACGGAGAGCACAGTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246184 lncRNA downstream 59137 1887061 ~ 1887628 (-) True G181622
TU246182 lncRNA downstream 105166 1841388 ~ 1841599 (-) True G181620
TU246174 lncRNA downstream 142254 1804232 ~ 1804511 (-) True G181612
TU246172 lncRNA downstream 150094 1796256 ~ 1796671 (-) True G181610
TU246161 lncRNA downstream 263346 1683039 ~ 1683419 (-) True G181599
TU246237 lncRNA upstream 216180 2165704 ~ 2165990 (-) True G181665
XR_005636827.1 lncRNA upstream 237489 2187013 ~ 2187539 (-) True LOC120546180
XR_005636826.1 lncRNA upstream 238011 2187535 ~ 2191637 (-) True LOC120546179
TU246261 lncRNA upstream 326306 2275830 ~ 2276085 (-) True G181684
TU246298 lncRNA upstream 501171 2450695 ~ 2479367 (-) True G181715
XM_039782072.1 mRNA downstream 286207 1604943 ~ 1660558 (-) True lama4
XM_039782609.1 mRNA downstream 369302 1540093 ~ 1577463 (-) False tube1
XM_039782716.1 mRNA upstream 86141 2035665 ~ 2163743 (-) True LOC120547226
XM_039782717.1 mRNA upstream 86141 2035665 ~ 2163689 (-) False LOC120547226
XM_039781100.1 mRNA upstream 373140 2322664 ~ 2325278 (-) True LOC120546265
XM_039781102.1 mRNA upstream 373140 2322664 ~ 2325054 (-) False LOC120546265
XM_039782382.1 mRNA upstream 409909 2359433 ~ 2384085 (-) True frk
unassigned_transcript_1007 other downstream 1092542 854151 ~ 854223 (-) True trnav-aac_19
unassigned_transcript_1005 other downstream 1098932 847762 ~ 847833 (-) True trnad-guc_21
unassigned_transcript_1002 other downstream 1104740 841954 ~ 842025 (-) True trnad-guc_20
unassigned_transcript_1000 other downstream 1109520 837174 ~ 837245 (-) True trnad-guc_19
unassigned_transcript_996 other downstream 1118231 828463 ~ 828534 (-) True trnad-guc_18
TU246464 other upstream 1426241 3375765 ~ 3376108 (-) True G181860
TU246538 other upstream 1659323 3608847 ~ 3610329 (-) True G181919
TU246718 other upstream 1942118 3891642 ~ 3893159 (-) False srp9
TU246726 other upstream 1957093 3906617 ~ 3912279 (-) True G182061
TU246722 other upstream 1959023 3908547 ~ 3914015 (-) True G182059

Expression Profile