RNA id: XM_039782474.1


Basic Information

Item Value
RNA id XM_039782474.1
length 3836
RNA type mRNA
GC content 0.50
exon number 4
gene id dse
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 2502768 ~ 2533772 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCACAGTCCCCTCTCTGATGAGACGATGAGAACCCACACCCGCGGGGCCCCCACAGTATTCTTCATAAGTCTGCTGTGGCCCCTGCTTGCCCCGGCGGCGGCGGAAGTGGACCCCAGCGGAGGAATCCCCTTCATGGGAGGTAACTACAATGGCCATCCCATGCTGTACTTCAATCGGGGCGACGTGGAGGAGCTGCAGTACGCGGCCACCGGCACTCATCGGGACATGGCGAGGAGGATCCGCGAGGCTGGGGAAACCATGCTGGAGCATCCCGAGATGTACCTGCCCCCCTGGAGCCCCGCAGAGTTCAGCGCCCGCTGGAACGAGGTGTACGGAAACAACCTGGGCGTGCTGTCCATGTTCTGCGTGCTGTACCCACACAGGGCCGGGGCCCTCGACCTGGTCAAGGACTACATGGAGAGGATGGCGGCTCAGCCTAGTTGGTTACCTCCAGGAGGCCTACCTGTGGACCAAGCAGGTCCTGTCCATCATGGAGAAGTCCATGGTCCTTCTGCAGGATGTGACGGATGGCTCCCTGTATGAAGGAGTGGCCTACGGGACTTACACCACCCGCTCTCTGTTCCAGTACATGTTCCTGGTGCAGCGCCACTTTGCCATCAGCCACTTCGACCACCCCTGGCTGCTGAAACACTTTGCCTTCCTGTACAGGACCATCCTGCCAGGATTTCAGCGGACTGTAGCCATTGCAGATTCCAACTACAACTGGTTCTACGGGCCGGAGAGCCAGCTGGTCTTCTTGGACCGCTATGTGTTACGTAATGGCAGTGGAAACTGGCTGGCAGAGCTGATTCATCAGAACAGGGTGATGGAGGGGCCAGGGCAGGCTGGGAAAGGCCAGCGGTGGTGTACTCTCCACACAGAGTTCATCTGGTATGACCCAGGACTGTTTCCAAAGCCTCCGTCAGATTTCGGAACGTCCCAACTCCACTACTTTGAGGACTGGGGCGTGGTGACGTACGGCAGCGCTTTGCCCGCAGACACCAACCGCACCTTCCTCTCCTTCAAGTCAGGGAAGCTGGGGGGGCGCGCCATCTTCGACATCGTTCACAGGAACAAGTACAAGGAGTGGATCAAAGGGTGGAGGAACTTTAACGCCGGCCACGAGCACCCGGATCAGAACACTTTCACCTTTGCGCCCAATGGTGTCTCATTCATCACCGAGGCACTGTACGGACCCAAGTACACTCTGCTGAACAATGCTGTGTTGTTTCGCTCTGCCGTCTCAGGGAGTTGCTTTAAGCCGTGGGCTGGACAGGTTACGGAAGCCTGTGATTCCAAGTGGCTGAAGTACAAGGTGGGGCTGGCGGCGGACGCCCAGGGCAGAGTGGAAGCCGCCATGGAGAGACAGGGAATGGTCTTCATCCGTGGTGAGGGCCATTCGGCTTATAATCCAGAGCTGAAGATCAGAAACTTCCAGAGAAACCTGCTCCTTCTTCACCCACAGCTCCTGCTCCTGGTGGACCACATCCACCTGGATCCAGACAGCCCAACCAGAGCCATGACAGCCTTCTTCCACAACACGGAACTCCCATTCCAGGGTACAAAGGTGGACGGTGTTCACGGAGCGTTTGTATCACACGGTGAGGATCGATATAAGATGTTCTGGATGGATGACACAGGCTACAGTAACAAAGGAGTGGTTGGTTACTGGAATTACCCTCGAGGGTACCCGTACAATGGCTCCAACTATGTGAACGTCACAATGCCATTGAGGTACCCGCACACCAGGGTGGCCTACATTTTCTTTGGACCAGGCGTGGACGTGCAGAGCTTCAGCTTGCGTGGCGACGACCAAAGAGTGGATATTTATCTGGCCACCAAGGATCACACCTACACTATCTACCTGCTGACCGGAGAGGTCAGCAGCAAGCCTCTGTTCGCCATGGTGCTGCTGGACAACAAAAAGATCGTGTTCGAGAAGGGGGCGGCGACGGCGGATGACAGCTCGCCCGAGGAGGTAGAGGAATACGTCAACGTGATGGAGGACAACCTCCAGCACGTCAAGCCCGTCTTCCAGCAGATGGAGAGACACATCCTCGGGCGGGTTCTCAACACCGCCAGCTTCCGTAAGAGTGCGGAGCGCCTCCTCCAGTTCTCCGACAAGAAGAAGACAGAAGAGGTCATCGAGAAGATGTTTGCCATGTCCAAGAAACAGGGCAAGGGTAAAGGGGGGAAGAGAGTGAACCTTGGGGAGAAGCTTTCGGAGAGTCTACCTGACATTTTTGCACAGATCGAGGTGAATGAGAAAAAGGTAAGACAGAGGACTTCAAAGCGTACATACGAGGACAGTccggaggagggagagggagagtcGCGGGCCTTTATGGATTATACAGACGGACGCAAAAACAGAAAGGGGGCCTTTGTCAAGGGCCGCAAATTCAACGAGGTTCACATGGTGGCCACAGCAGGCAGCGAGGGTCTCAACAGCACCGCCTCCTACATCCGACTCTTCCTGCTCCTGAACACCGCCACCTTCTTCCTGCTGCTGGCCGTCTTACTGACTCGCTTCCAGAGAGGTCGGAGTTTGCACACGCAGAGATGTTTCTACACCATCCTCCTGATCGACTGCTTCATCTTACTGTACCTGTACTCCTCCTGCTCTCACACGCAGTGTTAACGCCAGGAGCGAGCCAGGGGGCGTCCAACTgcaggtagggctgggtaccaaattcaGTACTTTTTAGGCAGCGACCAAATTGCCTCTTTAGTTTCGAGTATCGGAAAATGCCTCGCCATTCGCACCCAATTACAacacctaaggagtaaatctcatcagcgtcagggagccaataagcacgcacatgcttctaccaagatctaataacacttgtgattggctgtctaacgttacacgtcgtagagacacgcaggaaaaactctacgttacacagagacggctCAGGTAGTCAGAGCTGGAACATATATAAAAAggtttgtgccgtaatgtgtaattgtgtgtaaatgtgtaaatttggtaacgaaaaaagtattgtttaggaaccAGTACCAAAGTCACAGTATTGGCATTGGTACCAGTATCGAAGATTTTTGAACGCTACCCAGCCCTAACTAAAGATCCATCGAGCTGTTGTTCTGCACCCCCACACCTCAGTCTGAGCCACATCTTAGAACACAGTATTAGGGACacttttagaaaataaaaaaaaatcggtGATTTCCAGGATAGAAAATACAATTTTGAAAAAGTTGCAATATTTCAACGATGGAACAAAGTCATAATGTTATGAGATTCTTGTATGTGCTTGTGTCGTAGTCTGGTCCAGTCTGTCAGACGAGGGATGTGAATGTTATCAAGTTATTGGTTTATATCTATAAGCGTAGATTTTAGGACAcagaataaaatgaaaaatgtagcaGGATATTATGTTGTAAAATGACAATCTTATCTCCTAATATAACCTTTTCTAGAAATGATGACTTCTCctaattttatgactttttcccccaaaaaactACTTACATAGATTAGTTTTATTTCCTCAATATGAATTTTCTTCTCATAATACAGTATTATGATTTTTATTGCCTgaattttgacttttatttttgtagttttatgactttttcattttcagttcattttcacaataTTGTGATTTTGGTTCTCATAATATCTCTTTCTAGAGATTACAACTTCACTCTCCTAATATGACttcttctattttatttatatagcccaaaATCATAAATTTGCCTTAGGGGGCTTCAGGATATTATTCTATAAACTTTATTCTCATAatgttatgactttttctagAAATTCCAACCGTATTCTCATAAAATTCTGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246290 lncRNA upstream 9511 2487951 ~ 2497160 (+) False nt5dc1
TU246291 lncRNA upstream 17359 2488782 ~ 2489312 (+) True G181708
TU246246 lncRNA upstream 317288 2188920 ~ 2189383 (+) True G181672
TU246196 lncRNA upstream 495248 1946763 ~ 2011423 (+) False marcksa
TU246197 lncRNA upstream 495248 1946763 ~ 2011423 (+) False marcksa
TU246324 lncRNA downstream 10451 2543901 ~ 2544905 (+) True G181736
TU246330 lncRNA downstream 17223 2550673 ~ 2550930 (+) True G181742
TU246329 lncRNA downstream 24571 2558021 ~ 2558839 (+) True G181741
TU246328 lncRNA downstream 25510 2558960 ~ 2561009 (+) True G181740
TU246343 lncRNA downstream 33872 2567322 ~ 2567751 (+) True G181755
XM_039781877.1 mRNA upstream 9540 2388006 ~ 2497131 (+) True nt5dc1
XM_039780946.1 mRNA upstream 312794 2182346 ~ 2193877 (+) True LOC120546178
XM_039780947.1 mRNA upstream 312794 2182346 ~ 2193877 (+) False LOC120546178
XM_039782595.1 mRNA upstream 557141 1945558 ~ 1949530 (+) True marcksa
XM_039782286.1 mRNA upstream 600974 1904952 ~ 1905697 (+) True LOC120546973
XM_039782816.1 mRNA downstream 5837 2539287 ~ 2542904 (+) True ndufaf4
XM_039782207.1 mRNA downstream 15996 2549446 ~ 2557939 (+) True gpr63
XM_039782019.1 mRNA downstream 370541 2903991 ~ 3003435 (+) True epha7
XM_039782014.1 mRNA downstream 370542 2903992 ~ 3003435 (+) False epha7
XM_039782015.1 mRNA downstream 370542 2903992 ~ 3003435 (+) False epha7
TU246275 other upstream 18820 2482986 ~ 2487851 (+) False nt5dc1
unassigned_transcript_1011 other upstream 726264 1780326 ~ 1780407 (+) True trnas-gcu_17
unassigned_transcript_1010 other upstream 733013 1773577 ~ 1773658 (+) True trnas-gcu_16
unassigned_transcript_1009 other upstream 735364 1771229 ~ 1771307 (+) True trnas-gcu_15
unassigned_transcript_1008 other upstream 738053 1768537 ~ 1768618 (+) True trnas-gcu_14
TU246346 other downstream 57019 2590469 ~ 2591346 (+) True G181758
TU246572 other downstream 1230922 3764372 ~ 3771330 (+) True lyrm2
TU246582 other downstream 1251345 3784795 ~ 3792897 (+) True G181944
TU246595 other downstream 1289364 3822814 ~ 3829423 (+) True LOC120547057
XR_005637049.1 other downstream 1514644 4048094 ~ 4051091 (+) True LOC120547324

Expression Profile