RNA id: TU246553


Basic Information

Item Value
RNA id TU246553
length 812
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G181929
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 3651795 ~ 3652606 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atttttgcctcgaaggtgtcgagagtaagtttttttaaggagggcatgagggttaagacAAAGAACAACACCTgtccctctgtttgactgagtcCAAAAGCTGATAAGGAAggtagtgctgacacacacacacttgcttcatgcaatgaagaaatgcttggcactgatacactgttttttttgtttttgctattagggacaattgataGGTTAGAAAGTACTGAAAAAAAGAATCTAATCAGTTAAACCATTATAGTATGTTATCTTCTGAAACCTGGAAGAAAATGCCTACTACTGAGGGTAAAGTTAAAAGGGTTCCACTCACATAACTTGATTATTAGAGCTAAAGATTTGACACTGAAGTGCAGTGGTCATTCTATTTGGTCAATTGGGAATACAGGTTAAACGGTAAAAGAACAATTTTCTGTTCCTTTCTCATATACATGGGAAACTTTTTTTTGGTGTCTgatttatgtccacttattttgctcaggtagtgatttaatgtgcacttttaacattggcttaacctcaacacctgacgAATAGAGAATTTATCGTAATGATGCATCTAACAAAACCACATTTGTTAATCACAGTGTGGCTAAAATGACCTCACTGAGGCAGCGTCTGTAATCAGCCCTGCCTCTGACTGCATGAAACCTGACAACCTGCACTACACAGCTCCTGTTACTACAGGGCCTGATGAAGAATGCTCAAAACGGTTCTTTAGAGACATAATGACAGTTTGACAACCTTACATCTGATTTGGACTGATACTGACTGTGTTGTAGCTGTATGCTTGACTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246546 lncRNA downstream 4008 3646853 ~ 3647787 (-) True G181922
TU246541 lncRNA downstream 22992 3622982 ~ 3628803 (-) True G181920
TU246539 lncRNA downstream 23236 3622982 ~ 3628559 (-) False G181920
TU246535 lncRNA downstream 57411 3593995 ~ 3594384 (-) True G181916
TU246531 lncRNA downstream 124558 3526132 ~ 3527237 (-) True G181912
TU246559 lncRNA upstream 5765 3658371 ~ 3659550 (-) True G181932
TU246659 lncRNA upstream 100047 3752653 ~ 3755268 (-) False G182004
TU246657 lncRNA upstream 100126 3752732 ~ 3755268 (-) True G182004
TU246674 lncRNA upstream 178144 3830750 ~ 3831397 (-) True G182018
TU246683 lncRNA upstream 213411 3866017 ~ 3866360 (-) True G182027
XM_039782865.1 mRNA downstream 7225 3640175 ~ 3644570 (-) True gja10b
XM_039782644.1 mRNA downstream 1038260 2590462 ~ 2613535 (-) True ufl1
XM_039781876.1 mRNA downstream 1244640 2400734 ~ 2407155 (-) True col10a1b
XM_039782382.1 mRNA downstream 1267710 2359433 ~ 2384085 (-) True frk
XM_039781102.1 mRNA downstream 1326741 2322664 ~ 2325054 (-) False LOC120546265
XM_039782303.1 mRNA upstream 8947 3661553 ~ 3678597 (-) True casp8ap2
XM_039782441.1 mRNA upstream 120564 3773170 ~ 3822913 (-) False ankrd6b
XM_039782440.1 mRNA upstream 120564 3773170 ~ 3822913 (-) False ankrd6b
XM_039782432.1 mRNA upstream 120564 3773170 ~ 3822913 (-) False ankrd6b
XM_039782436.1 mRNA upstream 120564 3773170 ~ 3822909 (-) False ankrd6b
TU246538 other downstream 41466 3608847 ~ 3610329 (-) True G181919
TU246464 other downstream 275687 3375765 ~ 3376108 (-) True G181860
unassigned_transcript_1007 other downstream 2797572 854151 ~ 854223 (-) True trnav-aac_19
unassigned_transcript_1005 other downstream 2803962 847762 ~ 847833 (-) True trnad-guc_21
unassigned_transcript_1002 other downstream 2809770 841954 ~ 842025 (-) True trnad-guc_20
TU246718 other upstream 239036 3891642 ~ 3893159 (-) False srp9
TU246726 other upstream 254011 3906617 ~ 3912279 (-) True G182061
TU246722 other upstream 255941 3908547 ~ 3914015 (-) True G182059
TU246771 other upstream 447404 4100010 ~ 4100480 (-) True G182102
unassigned_transcript_1013 other upstream 496301 4148907 ~ 4148978 (-) True trnav-aac_20

Expression Profile