RNA id: TU247093


Basic Information

Item Value
RNA id TU247093
length 376
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G182368
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 5235833 ~ 5236208 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctaaagttagccatggcgttccacaaggctcagtgcttggaccaattttattctccttatatatgcttcctcttggtaatattattaggaaacactcaattaactttcactgttatgcggatgacacccaattatacttgtcaatcaaatccGACGAAACCaatcagctagctaaacttcaagcgtgcattaaagatataaaatcctggatgacctataattttctgatgttaaactctaacaaaactgaagttattgtgctgggccctaaacacctccgaacctcattatctaaagacttagctactctggatggtattgccctggcctccagcactactgtcagaaatctaggggttattttttatcaggatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247092 lncRNA downstream 9163 5226393 ~ 5226670 (-) True G182367
TU247083 lncRNA downstream 90113 5145512 ~ 5145720 (-) True G182358
TU247081 lncRNA downstream 109812 5125813 ~ 5126021 (-) True G182356
XR_005637016.1 lncRNA downstream 122112 5112241 ~ 5113721 (-) True LOC120547022
TU247073 lncRNA downstream 135381 5100188 ~ 5100452 (-) True G182348
TU247119 lncRNA upstream 75312 5311520 ~ 5312472 (-) False zgc:112001
TU247143 lncRNA upstream 150599 5386807 ~ 5388183 (-) True G182413
TU247174 lncRNA upstream 431509 5667717 ~ 5667916 (-) True G182441
TU247176 lncRNA upstream 460248 5696456 ~ 5696803 (-) True G182443
TU247227 lncRNA upstream 541044 5777252 ~ 5777743 (-) True G182472
XM_039780973.1 mRNA downstream 112052 5115179 ~ 5123781 (-) True LOC120546193
XM_039781005.1 mRNA downstream 321642 4871142 ~ 4914191 (-) True LOC120546227
XM_039782808.1 mRNA upstream 11737 5247945 ~ 5253700 (-) True LOC120547277
XM_039782918.1 mRNA upstream 23257 5259465 ~ 5279720 (-) True LOC120547345
XM_039780916.1 mRNA upstream 75298 5311506 ~ 5313715 (-) True zgc:112001
XM_039782565.1 mRNA upstream 152945 5389153 ~ 5588237 (-) False lrfn2b
XM_039782564.1 mRNA upstream 152945 5389153 ~ 5588237 (-) False lrfn2b
TU246982 other downstream 432363 4745773 ~ 4803470 (-) False smim8
TU246981 other downstream 432363 4798921 ~ 4803470 (-) False smim8
TU246980 other downstream 432363 4800911 ~ 4803470 (-) True smim8
unassigned_transcript_1027 other downstream 1056893 4178869 ~ 4178940 (-) True trnad-guc_28
unassigned_transcript_1024 other downstream 1060807 4174955 ~ 4175026 (-) True trnad-guc_27
TU247229 other upstream 554081 5790289 ~ 5792938 (-) True G182474
TU247260 other upstream 675104 5911312 ~ 5911909 (-) True G182502
TU247550 other upstream 1464283 6700491 ~ 6701117 (-) True G182764
unassigned_transcript_1029 other upstream 1790934 7027142 ~ 7027214 (-) True trnak-uuu_18
unassigned_transcript_1030 other upstream 1793766 7029974 ~ 7030046 (-) True trnak-uuu_19

Expression Profile