RNA id: TU247229


Basic Information

Item Value
RNA id TU247229
length 890
RNA type TUCP
GC content 0.45
exon number 4
gene id G182474
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 5790289 ~ 5792938 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGGACTGTTATATAAGGCAGAATTTTTGTGGGCAGAAACCAGCTGAGCTGTAATTACATCTGTACTAAAACTGTGTGCTTGTTAGAACATCTACGTCTTTGTTCCTATAGCCTGATTAAATAACAACTATGGAGCTTCTTCTGgatctgctgtgtttttgtcttcTGTGTTTGACCGGAAAATACTTTGTGATGAAAACGAGCCAAAATACATCACAATGAAAGAAGGGACAGATGTTGTGTTACCCTGTTCTCTCAGCACCAAGGAGAACGTTGAGTCAAAAGTGTTTGACTGGAGGAAAGTTGCTCAGAAAGATGATGGTCTGAAGGAGGTGTTCATGTATGATGCAGGCTTTCATAACAATAACGCGGTCCAGGTCAGAGTGGAAGAGTTTACAGGGTCGAGTCTCACAATTTGAAGATGAACGGAAACACGGCAACGTCTCCATAATCATCAGAAATATGAAGGAGGCTGACAGTGGAGACTACACCTGTCATTTCCCACGTCTTCATCAAATGTTCCACCTTAAGCTTGTTGTTGTTGCTCCAGAGCCAGACATCAACATTATTGATGCCACAGATGATGGAGTGTTGCTGCAGTGTGAGGTCCGAGGTGCTGCTCCCAAACCTAGAGTAGAGTGGCAGGACAGAGATGGAAACAAACTTCCTGCTGAAGACCCGCAGGTCTCTGAAAGAGGAGACAGATACCACATCACCCTCCAGACTACTGTGACCAAGACCGGCAGCTGTCGCTGTGTCGTCACACAGGAGGAAACCAACCGGAGGACTCATGCTGAGATTTATGTGGCTATTATTGACAACAACACGAGCATATGGACCTATATGCACCTATATGGAGCTGGAACTCTTGCTGTTCTtgcagttgtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247227 lncRNA downstream 12546 5777252 ~ 5777743 (-) True G182472
TU247176 lncRNA downstream 93486 5696456 ~ 5696803 (-) True G182443
TU247174 lncRNA downstream 122373 5667717 ~ 5667916 (-) True G182441
TU247143 lncRNA downstream 402106 5386807 ~ 5388183 (-) True G182413
TU247119 lncRNA downstream 477817 5311520 ~ 5312472 (-) False zgc:112001
TU247259 lncRNA upstream 117757 5910695 ~ 5911116 (-) True G182501
TU247266 lncRNA upstream 137725 5930663 ~ 5955950 (-) True G182507
XR_005636948.1 lncRNA upstream 177895 5970833 ~ 5974899 (-) True LOC120546803
TU247272 lncRNA upstream 183183 5976121 ~ 5976390 (-) True G182513
TU247278 lncRNA upstream 188466 5981404 ~ 5982754 (-) True G182518
XM_039782565.1 mRNA downstream 202052 5389153 ~ 5588237 (-) False lrfn2b
XM_039782564.1 mRNA downstream 202052 5389153 ~ 5588237 (-) False lrfn2b
XM_039782563.1 mRNA downstream 202052 5389153 ~ 5588237 (-) False lrfn2b
XM_039782562.1 mRNA downstream 202052 5389153 ~ 5588237 (-) True lrfn2b
XM_039782566.1 mRNA downstream 339340 5389153 ~ 5450949 (-) False lrfn2b
XM_039781983.1 mRNA upstream 193499 5986437 ~ 6009440 (-) False gopc
XM_039781982.1 mRNA upstream 193499 5986437 ~ 6009439 (-) False gopc
XM_039781981.1 mRNA upstream 193499 5986437 ~ 6009439 (-) True gopc
XM_039781997.1 mRNA upstream 277608 6070546 ~ 6073220 (-) True LOC120546792
XM_039781989.1 mRNA upstream 439804 6232742 ~ 6268926 (-) False cgrrf1
TU246982 other downstream 986819 4745773 ~ 4803470 (-) False smim8
TU246981 other downstream 986819 4798921 ~ 4803470 (-) False smim8
TU246980 other downstream 986819 4800911 ~ 4803470 (-) True smim8
unassigned_transcript_1027 other downstream 1611349 4178869 ~ 4178940 (-) True trnad-guc_28
unassigned_transcript_1024 other downstream 1615263 4174955 ~ 4175026 (-) True trnad-guc_27
TU247260 other upstream 118374 5911312 ~ 5911909 (-) True G182502
TU247550 other upstream 907553 6700491 ~ 6701117 (-) True G182764
unassigned_transcript_1029 other upstream 1234204 7027142 ~ 7027214 (-) True trnak-uuu_18
unassigned_transcript_1030 other upstream 1237036 7029974 ~ 7030046 (-) True trnak-uuu_19
unassigned_transcript_1031 other upstream 1238709 7031647 ~ 7031723 (-) True trnak-uuu_20

Expression Profile