RNA id: TU247260


Basic Information

Item Value
RNA id TU247260
length 598
RNA type TUCP
GC content 0.38
exon number 1
gene id G182502
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 5911312 ~ 5911909 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctccacttctaacggttcacctttaaacgcagagtcgctagaaataaagactagtctcgacatatacttagactgcttttatcctatagaccttcaacaattaatgttaaagatatcctcagctaagccatctacctgtctcttagaccccatcccaacgagactactcaaagaagcattacctgtggttaacacctcattactagatatgatcaatatgtctctattaacaggttatgtaccacagtcatttaaagtagctgtgataaaacctcttctgaaaaaacccaccctggatcctgaggtcttagcaaactatagacctatatctaaccttccctttctatccaagatccttgagaaggtggttgctaatcagttatgtgattttctacatagcaatagtttatttgatgactttcaatcaggatttagaaagaatcatagcacagagacggcactggtgaaaattactaacgaccttttaactgctgcagacaaaggtcttgtctccattcttgttttactagatcttagtgctgcatttgacactattgaccattcaatcctgttacagagattggaacacttggttggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247259 lncRNA downstream 196 5910695 ~ 5911116 (-) True G182501
TU247227 lncRNA downstream 133569 5777252 ~ 5777743 (-) True G182472
TU247176 lncRNA downstream 214509 5696456 ~ 5696803 (-) True G182443
TU247174 lncRNA downstream 243396 5667717 ~ 5667916 (-) True G182441
TU247143 lncRNA downstream 523129 5386807 ~ 5388183 (-) True G182413
TU247266 lncRNA upstream 18754 5930663 ~ 5955950 (-) True G182507
XR_005636948.1 lncRNA upstream 58924 5970833 ~ 5974899 (-) True LOC120546803
TU247272 lncRNA upstream 64212 5976121 ~ 5976390 (-) True G182513
TU247278 lncRNA upstream 69495 5981404 ~ 5982754 (-) True G182518
TU247276 lncRNA upstream 72941 5984850 ~ 5985303 (-) True G182517
XM_039782565.1 mRNA downstream 323075 5389153 ~ 5588237 (-) False lrfn2b
XM_039782564.1 mRNA downstream 323075 5389153 ~ 5588237 (-) False lrfn2b
XM_039782563.1 mRNA downstream 323075 5389153 ~ 5588237 (-) False lrfn2b
XM_039782562.1 mRNA downstream 323075 5389153 ~ 5588237 (-) True lrfn2b
XM_039782566.1 mRNA downstream 460363 5389153 ~ 5450949 (-) False lrfn2b
XM_039781983.1 mRNA upstream 74528 5986437 ~ 6009440 (-) False gopc
XM_039781982.1 mRNA upstream 74528 5986437 ~ 6009439 (-) False gopc
XM_039781981.1 mRNA upstream 74528 5986437 ~ 6009439 (-) True gopc
XM_039781997.1 mRNA upstream 158637 6070546 ~ 6073220 (-) True LOC120546792
XM_039781989.1 mRNA upstream 320833 6232742 ~ 6268926 (-) False cgrrf1
TU247229 other downstream 118374 5790289 ~ 5792938 (-) True G182474
TU246982 other downstream 1107842 4745773 ~ 4803470 (-) False smim8
TU246981 other downstream 1107842 4798921 ~ 4803470 (-) False smim8
TU246980 other downstream 1107842 4800911 ~ 4803470 (-) True smim8
unassigned_transcript_1027 other downstream 1732372 4178869 ~ 4178940 (-) True trnad-guc_28
TU247550 other upstream 788582 6700491 ~ 6701117 (-) True G182764
unassigned_transcript_1029 other upstream 1115233 7027142 ~ 7027214 (-) True trnak-uuu_18
unassigned_transcript_1030 other upstream 1118065 7029974 ~ 7030046 (-) True trnak-uuu_19
unassigned_transcript_1031 other upstream 1119738 7031647 ~ 7031723 (-) True trnak-uuu_20
unassigned_transcript_1032 other upstream 1121421 7033330 ~ 7033402 (-) True trnak-uuu_21

Expression Profile