RNA id: XM_039781992.1


Basic Information

Item Value
RNA id XM_039781992.1
length 1770
RNA type mRNA
GC content 0.49
exon number 6
gene id cgrrf1
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 6232742 ~ 6269143 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagaaaaagaaaaaaaacgatacccaaccctactctggGTCCTTCAGTCCTATAATGCGAATGAGGAAATCAGAGAATTGTTTCAGATGATGTTTCCCGACTCTGACATCTGTcgttttttgtttagtttttattgttgtgaTATAAGTCTTAAAATTCATTCATAATGTCTTAAAGTCCTAAATTTGACTTGTTGGAACCTGCTGAAACCCTGAGCCTGCTTTCTCTGTAGTTATCATCCGCTCATGAACTGCTAACCGACAAGCAGGCAACAAAGTCCCAGTTCACTCGTACGCATACTTTCCGCACTACGTGTCCGTGGACAACTGCAGACTTGTACCGGTCGCAGGCAGCCCTGATGTTACGTCCATTGTTGTGGCCACTTTTCTGGAACAGCTTGCGCAACcaacacaagtccacagcgTTCGGCGGCGTGTATGTCTGAGCCTGTCTACATCGCATCCACCTGCAgtgttgtcagctgtgtgtctgcctgatATACTTTGTGTGTAGGACGCCATTCCTCAttgatatagtgacatttagCTCTTTGTTGTGAGCACCGTCCAGCAGATCTTCAAACGCTTTGCTAGTGCAAAGTTAGCACTAGCAAGCACTAGCAACTTGCTAGTACAAGCACTAGCAGTTAAATAGTTAATTATTAACATCCCCAGTGTCATGTCATCCTTGATGAGCTCAAGCGACTTatcctgtctttctttctcttatgAGGCTTTGACCGGCTTTCCTCCTTTCCCACCTCCTGGTTACCCTCTGCTGTACTTGGCCCTGGTTTGGCTTTGATGTCCCAGTGATCCTTCGCAGCTCTGATGAAACAGAGTCCCATCTACCAACCCCTGAGAAGCAAATGGTTCAGATGACCAATCCTTTCACCCTTGAGTTGGGATCTGGGCCAGCATCTGTCACTGATGGTGTGTCAGTGAGACCTTGCTGTCTGGAGCCCTGTGTCCTGAGCTGTTTCTGGGGCTGTAAGGTCAGTGCCCTGCAGGGAGCACTGCAGGCCCACCAGCATGGTCTGAAGCTCAGCACCCCCCAACATTTTCTGGAAGCCCTGCACCTCCACTATCACAACTGCCAGATCTTCCATATCGGCAATGAAGATCGAGTGGAACGCCACACACAGATTCCTGCTGACCATGAGATCAAAGATTTTGGGCTTTTGCCAAGGGAACACTACCCTCTTCTGGCTGTGCTGACGCTGGCAGAGCCAGAAGCCAGAGATGCATACAACATTGTGGCTAGTGTGACAGTTATTCATGTTCCTGATGACAAATACAGCCTTTCTGCACGGGTTCTCTTTCAGTACCTTCTCACCTCACAAGGGAACATGTACGAGTTAAAGCCTCTCTTCATGTCAGCTGCCAGTAGGGGGGCATCTGAGCCCTTCGACTCAGAGCAGAATACCCAACCCAGTGAACCCAATGACGAGGCCAGCAGAGTCGAGCAGAGTccagtggtggaggaggaggagaatgaCTGGTCAGAGGGAAAGGGCAGAGACTGTGTGGTCTGTCAGAATGCAGCGGTGAACAAGGTGTTGCTGCCCTGCAGACacgcctgtgtgtgtgacagctgtGTGTCACACTTCCAGCACTGCCCCATCTGCAGGGCCTTCGTCCAGGAGTCCTTCACCCTGACACAGGGACCAGCTGCAGAACAATGACTCCATACCGAACCAGTGAATGTTATTTAAGAAATAATTTGCAGCAAGACAGGCATCATTGCAAATAAACCCTGACGCCAAATCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247348 lncRNA downstream 44716 6169323 ~ 6188026 (-) True G182580
TU247346 lncRNA downstream 67318 6164762 ~ 6165424 (-) True G182578
TU247345 lncRNA downstream 68305 6164215 ~ 6164437 (-) True G182577
TU247342 lncRNA downstream 72884 6159565 ~ 6159858 (-) True G182574
TU247335 lncRNA downstream 103914 6128583 ~ 6128828 (-) True G182567
TU247463 lncRNA upstream 19277 6267152 ~ 6269143 (-) False cgrrf1
TU247473 lncRNA upstream 35643 6283518 ~ 6284813 (-) True G182694
TU247491 lncRNA upstream 111586 6359461 ~ 6361479 (-) True G182710
TU247492 lncRNA upstream 124612 6372487 ~ 6373198 (-) True G182711
TU247496 lncRNA upstream 133333 6381208 ~ 6407923 (-) True G182714
XM_039781997.1 mRNA downstream 159522 6070546 ~ 6073220 (-) True LOC120546792
XM_039781983.1 mRNA downstream 223302 5986437 ~ 6009440 (-) False gopc
XM_039781982.1 mRNA downstream 223303 5986437 ~ 6009439 (-) False gopc
XM_039781981.1 mRNA downstream 223303 5986437 ~ 6009439 (-) True gopc
XM_039782566.1 mRNA downstream 781793 5389153 ~ 5450949 (-) False lrfn2b
XM_039781999.1 mRNA upstream 215065 6462940 ~ 6464802 (-) True LOC120546794
XM_039781984.1 mRNA upstream 514836 6762711 ~ 6800793 (-) True meis2b
XM_039782002.1 mRNA upstream 1196986 7444861 ~ 7588065 (-) False cnih3
XM_039782001.1 mRNA upstream 1196986 7444861 ~ 7588065 (-) False cnih3
XM_039782000.1 mRNA upstream 1196986 7444861 ~ 7588065 (-) True cnih3
TU247260 other downstream 320833 5911312 ~ 5911909 (-) True G182502
TU247229 other downstream 439804 5790289 ~ 5792938 (-) True G182474
TU246982 other downstream 1429272 4745773 ~ 4803470 (-) False smim8
TU247550 other upstream 452616 6700491 ~ 6701117 (-) True G182764
unassigned_transcript_1029 other upstream 779267 7027142 ~ 7027214 (-) True trnak-uuu_18
unassigned_transcript_1030 other upstream 782099 7029974 ~ 7030046 (-) True trnak-uuu_19
unassigned_transcript_1031 other upstream 783772 7031647 ~ 7031723 (-) True trnak-uuu_20
unassigned_transcript_1032 other upstream 785455 7033330 ~ 7033402 (-) True trnak-uuu_21

Expression Profile