RNA id: TU247550


Basic Information

Item Value
RNA id TU247550
length 627
RNA type TUCP
GC content 0.56
exon number 1
gene id G182764
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 6700491 ~ 6701117 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGAAGTGCAATCCTGGTAGAGCGCGTGTGTGACAAGGGCTGGCCTGGGACATGCTGGATGGCATGATCCGTCCGACAGGTAACCGGGTACAGGACACGCTGGCGGGGCGCACGATGGCAAGCAGGCCGGGTTGGGAAGATCCAGTCGGAGATGCTCCACACAGGCGATGACGCGCAGACCGCGTCCCGATCTGACTCGCAGACCAGAACCGGCCTCAGGCACCGCTCACTCCCAGGAGCACTGGATCCGTTTGGCCCAGATGAAAATCCACGGGATCGCCACTTTCTCCTCCAGACTTGGACCCCAGCCCTGGATCCCCGCTTCCTTCTCCTGCCGCGGCGCCGGGTAAGCAACAGGTATTCCGGCGATGATGCGTGGCACTCCAATTTTGGAGGGAAAAACTCAGAAAATCGGTCCCGGGTAATACAAAAGTCCTGCATATGTGCCTTAATGCCGAGCAACGCAGCCCGATCATACTGTATGATTGCAGAGACATAACTGGTAGTTGATAGGGTTGACACAATGAAAATCACAAGGAAGATTACAAATGtatgagagagcagagaggtgaCCGACGCATAGCCAAACACAGGCGCCATCTTTAAAGTAgaatcttgtgtgaggta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247548 lncRNA downstream 27843 6671241 ~ 6672648 (-) True G182762
TU247545 lncRNA downstream 70356 6629733 ~ 6630135 (-) True G182759
TU247525 lncRNA downstream 106666 6578093 ~ 6593825 (-) True G182741
TU247496 lncRNA downstream 292568 6381208 ~ 6407923 (-) True G182714
TU247492 lncRNA downstream 327293 6372487 ~ 6373198 (-) True G182711
TU247555 lncRNA upstream 9477 6710594 ~ 6711141 (-) True G182769
TU247561 lncRNA upstream 15628 6716745 ~ 6717073 (-) True G182775
XR_005636950.1 lncRNA upstream 31040 6732157 ~ 6732712 (-) True LOC120546805
TU247576 lncRNA upstream 55458 6756575 ~ 6756832 (-) True G182789
XR_005636949.1 lncRNA upstream 167358 6868475 ~ 6871244 (-) True LOC120546804
XM_039781999.1 mRNA downstream 235689 6462940 ~ 6464802 (-) True LOC120546794
XM_039781989.1 mRNA downstream 431565 6232742 ~ 6268926 (-) False cgrrf1
XM_039781991.1 mRNA downstream 433018 6232742 ~ 6267473 (-) False cgrrf1
XM_039781988.1 mRNA downstream 443356 6232742 ~ 6257135 (-) False cgrrf1
XM_039781990.1 mRNA downstream 443429 6232742 ~ 6257062 (-) False cgrrf1
XM_039781984.1 mRNA upstream 61594 6762711 ~ 6800793 (-) True meis2b
XM_039782002.1 mRNA upstream 743744 7444861 ~ 7588065 (-) False cnih3
XM_039782001.1 mRNA upstream 743744 7444861 ~ 7588065 (-) False cnih3
XM_039782000.1 mRNA upstream 743744 7444861 ~ 7588065 (-) True cnih3
XM_039780984.1 mRNA upstream 1348341 8049458 ~ 8126664 (-) False opn5
TU247260 other downstream 788582 5911312 ~ 5911909 (-) True G182502
TU247229 other downstream 907553 5790289 ~ 5792938 (-) True G182474
TU246982 other downstream 1897021 4745773 ~ 4803470 (-) False smim8
TU246981 other downstream 1897021 4798921 ~ 4803470 (-) False smim8
TU246980 other downstream 1897021 4800911 ~ 4803470 (-) True smim8
unassigned_transcript_1029 other upstream 326025 7027142 ~ 7027214 (-) True trnak-uuu_18
unassigned_transcript_1030 other upstream 328857 7029974 ~ 7030046 (-) True trnak-uuu_19
unassigned_transcript_1031 other upstream 330530 7031647 ~ 7031723 (-) True trnak-uuu_20
unassigned_transcript_1032 other upstream 332213 7033330 ~ 7033402 (-) True trnak-uuu_21
TU247776 other upstream 1060448 7761565 ~ 7766386 (-) True G182952

Expression Profile