RNA id: TU247729


Basic Information

Item Value
RNA id TU247729
length 2260
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC120546796
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 7349782 ~ 7386287 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACAGAAACATGAGTAATCAGCAGGAAGAATGGGAAGACCGGAATCCTGACACTAAACTAAAGTTATGTCCAACATTACCTGTGTTAGCTTACCTTACAGACTGTAGATAgtctaaaactgacatttggatatttgacttgttAATAAAATGCTTGCTGCAAACGTAACATTGGGCATATTGTTAGCTTAGTGTCAGAATCCCACAGTCTAAccattctctctgctgattcctcacgtcTATATCCACTTTAGTCAtcataaaagctcagtttttcggTTCCACAACTTATGAAAACTTAGGTTCTGGGTTCTATACATTGTTGGTAGTAAATATCACCACACGGCAGCTTTTAGGAATGTTTCGGTTTGCCAGCAGACAAAATTGAAGATGAGGCACCTTCATCCAATACAAGTCGATGGAGAGCAGAAAGATGTTTTCCTCTCTGGTGGGAGTATGACGCGATGTGCTGTGTctctattgtgcagccctaggtgGTTATGAGGTAACATCTAGCAACCATCTAGTTGCCATCTAGTCCCCTTGTAACAACcacacttttacagttttttttcagtctaaatgacttattattattattattattattagcacgACAATAGAAACCACCTAGTTACTACTGTCCAGACACCCatcattttagatttttaatctttaaacTCTGCAAGCAATTTTATATTGATTGGCCTTACTTCTTTGTCTAAGGTTCATCAACAATGGCGAGAAAGAAGTGGAGCACCGAGGAGGTCCAGGCTGTGGAGAGCAATCTCATGGACAACATCAACTCTGGCAGGGTTCCTGGTAAAGCCCAGTGTGAAGCATCTATCAAGGGATCCTCAGAGGTGCTTAGGGGAAGGAGCTGGCAGGCAGTTAAGTTCTATGTGAAGAACCGCATTGATACTTTAAAGCGTCTAGAAAATAACCAATGGAAATCTAAATTGTAATCACTGAACATAATTCTTTTTTGCCATCTAAGTACTTCTACAATCCCACAACTAGGTACAGCGCTTACTTGAATTCAGCTCATATCTGAGCATGCAACGACATTTTATTAAGATTGTTAAAGctcttttgttttcaaatttaataTGTCAACATGCTCTGACTATTATTTCATTGAGTgatgtcatttacatttttatcctAAAGAACATTGTGGTAGTCGGTCATGGGTGGTTGGAGAAatggaggtagagagagacacaggttgtagagagagtgaaaggtttgtagagagagacaggtttgcagggagagagagacaggtatgtaggaaatgagagagacaggtatgtaggtagagagagacaggtatgtagagagagacaggtatgtaggaaatgagagagacaggtatgtaggtagagagagacaggtatgtagagagagacaggtatgtagaaaggagagagacaggtatgtagattagagagtgagacaggtatgtatattagagagagagactatgTAGGGAGAGATAGATGGGTGAGTAGAAAGAGAAAGTGTTcctgaacattttttaaaataagaaacagaggtaaagagagagaaacacgtacagggagagagacaggtttgtAGAGAGAAATCGAGGtcagcagagacagacaggtttgtAGGAAGTAAGACAATAAGGTGAAGGAGAAGGAATGATCATAGCAAAGAGCCAGGACAAATTAATTTGTATATGGATGAGTTGTGATAATAAAGTTAATCTGCAATGTAAACACCATTGCTTCTGTGGCATTTCCTGAATGAACCAGAATATATAAAGTACTACAAGTCAAAGGTTGGTTGGAACAATACCGACAGGAAACGaagaaaaattaacaaaacaagtaCAAGGTGCAGGCAACTGCTGTCACTCCACTGTCCCTCAGTTTATGGAAGCAACACAGACTGCTGCCTGCTCACagctcttagtgtcctctcccAGTAGGACTGGTAATATAATTTAATCTGAGAGCTATAGAAAACATTTTGGTTCTTATATATATTCATTGGAAATATAGTTTccaaatgtttatatatttgacaTGTTAAGTGAGGAAGTTTGGCTCTGTTTTAGGCTCACTAAGGGTGCAATCAGTGGACAGCCTTTGCTCTACAGGGAGCCAGGTTTTCCTTTGTCACCTGTTTTCAATGGCAAGGCTGTGCGCACTCAGTCTGTACTGTGCCGATCCGTAACCATGCTCAAATAATCTGCTATGGTGTCCTGTTGATTTAGAGCAACAAAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247716 lncRNA downstream 5105 7343144 ~ 7344677 (-) True G182913
XR_005636943.1 lncRNA downstream 18247 7328374 ~ 7331535 (-) False LOC120546799
XR_005636942.1 lncRNA downstream 18247 7328378 ~ 7331535 (-) True LOC120546799
TU247649 lncRNA downstream 292563 7057006 ~ 7057219 (-) True G182850
TU247647 lncRNA downstream 305698 7043716 ~ 7044084 (-) True G182848
TU247784 lncRNA upstream 460439 7836593 ~ 7836797 (-) True G182957
TU247785 lncRNA upstream 461368 7837522 ~ 7837735 (-) True G182958
TU247789 lncRNA upstream 476830 7852984 ~ 7853601 (-) True G182962
TU247814 lncRNA upstream 664469 8040623 ~ 8041804 (-) True G182980
TU247823 lncRNA upstream 671346 8047500 ~ 8047938 (-) True G182983
XM_039781984.1 mRNA downstream 548989 6762711 ~ 6800793 (-) True meis2b
XM_039781999.1 mRNA downstream 884980 6462940 ~ 6464802 (-) True LOC120546794
XM_039781988.1 mRNA downstream 1092647 6232742 ~ 6257135 (-) False cgrrf1
XM_039782002.1 mRNA upstream 68707 7444861 ~ 7588065 (-) False cnih3
XM_039782001.1 mRNA upstream 68707 7444861 ~ 7588065 (-) False cnih3
XM_039782000.1 mRNA upstream 68707 7444861 ~ 7588065 (-) True cnih3
XM_039780984.1 mRNA upstream 673304 8049458 ~ 8126664 (-) False opn5
XM_039780983.1 mRNA upstream 673304 8049458 ~ 8126664 (-) True opn5
unassigned_transcript_1032 other downstream 316380 7033330 ~ 7033402 (-) True trnak-uuu_21
unassigned_transcript_1031 other downstream 318059 7031647 ~ 7031723 (-) True trnak-uuu_20
unassigned_transcript_1030 other downstream 319736 7029974 ~ 7030046 (-) True trnak-uuu_19
unassigned_transcript_1029 other downstream 322568 7027142 ~ 7027214 (-) True trnak-uuu_18
TU247550 other downstream 648665 6700491 ~ 6701117 (-) True G182764
TU247776 other upstream 385411 7761565 ~ 7766386 (-) True G182952
TU247804 other upstream 648561 8024715 ~ 8025044 (-) True G182977
TU247995 other upstream 1407634 8783788 ~ 8787217 (-) False LOC120546397
TU248116 other upstream 1753419 9129573 ~ 9133472 (-) True G183176
TU248390 other upstream 2723449 10099603 ~ 10101061 (-) False LOC120546281

Expression Profile