RNA id: TU247784


Basic Information

Item Value
RNA id TU247784
length 205
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G182957
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 7836593 ~ 7836797 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAATTCCTACCCCCACTGGCCTCAGGGTTGTGCGTTTTGAtaaaaatcatctttttccTGACATGTTTTCGTTAAAATCGAAAAGCACAAACTCTTTCACATTTCTATGGGACATTAACCTTTGTCAGGCTATCGACCTCCTGACAGAAGCACAACAACTAGTGTCACCTTTAGCAGAGCTAAGAACGCCACAACAAATGCATT

Function

GO: NA

KEGG:

id description
ko04520 Adherens junction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636939.1 lncRNA downstream 450306 7374840 ~ 7386287 (-) True LOC120546796
TU247719 lncRNA downstream 453352 7349782 ~ 7383241 (-) False LOC120546796
TU247721 lncRNA downstream 453352 7349782 ~ 7383241 (-) False LOC120546796
TU247728 lncRNA downstream 460439 7349782 ~ 7376154 (-) False LOC120546796
TU247729 lncRNA downstream 460439 7349782 ~ 7376154 (-) False LOC120546796
TU247785 lncRNA upstream 725 7837522 ~ 7837735 (-) True G182958
TU247789 lncRNA upstream 16187 7852984 ~ 7853601 (-) True G182962
TU247814 lncRNA upstream 203826 8040623 ~ 8041804 (-) True G182980
TU247823 lncRNA upstream 210703 8047500 ~ 8047938 (-) True G182983
TU247822 lncRNA upstream 212781 8049578 ~ 8049985 (-) False opn5
XM_039782002.1 mRNA downstream 248528 7444861 ~ 7588065 (-) False cnih3
XM_039782001.1 mRNA downstream 248528 7444861 ~ 7588065 (-) False cnih3
XM_039782000.1 mRNA downstream 248528 7444861 ~ 7588065 (-) True cnih3
XM_039781984.1 mRNA downstream 1035800 6762711 ~ 6800793 (-) True meis2b
XM_039781999.1 mRNA downstream 1371791 6462940 ~ 6464802 (-) True LOC120546794
XM_039780984.1 mRNA upstream 212661 8049458 ~ 8126664 (-) False opn5
XM_039780983.1 mRNA upstream 212661 8049458 ~ 8126664 (-) True opn5
XM_039781890.1 mRNA upstream 414919 8251716 ~ 8340747 (-) True LOC120546734
XM_039781889.1 mRNA upstream 414919 8251716 ~ 8340744 (-) False LOC120546734
XM_039781892.1 mRNA upstream 414919 8251716 ~ 8306809 (-) False LOC120546734
TU247776 other downstream 70207 7761565 ~ 7766386 (-) True G182952
unassigned_transcript_1032 other downstream 803191 7033330 ~ 7033402 (-) True trnak-uuu_21
unassigned_transcript_1031 other downstream 804870 7031647 ~ 7031723 (-) True trnak-uuu_20
unassigned_transcript_1030 other downstream 806547 7029974 ~ 7030046 (-) True trnak-uuu_19
unassigned_transcript_1029 other downstream 809379 7027142 ~ 7027214 (-) True trnak-uuu_18
TU247804 other upstream 187918 8024715 ~ 8025044 (-) True G182977
TU247995 other upstream 946991 8783788 ~ 8787217 (-) False LOC120546397
TU248116 other upstream 1292776 9129573 ~ 9133472 (-) True G183176
TU248390 other upstream 2262806 10099603 ~ 10101061 (-) False LOC120546281
XR_005636937.1 other upstream 2665123 10501920 ~ 10610625 (-) False LOC120546776

Expression Profile