RNA id: XM_039780983.1


Basic Information

Item Value
RNA id XM_039780983.1
length 2259
RNA type mRNA
GC content 0.45
exon number 7
gene id opn5
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 8049458 ~ 8126664 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGACTTGATGCTGCCGCTCCCCAGAGCGTCTCTGAGGTCTCAGAGGAGAAAGTTGAAGTTGACTCACAGGGATATTTTCACAAAACCTTTCTATACATTAACAGGACCGGAACTGACTGTTATCGGGGTTAAATGTAACAGAGGAAGTTTATTTATGGGAATTAAACTCCGCTCGGTATGACTGATGACCGATGGACAAAAGGATATTTCACACTCATGGCAGCGATGGAGAACGAGACGTGGCCCCACCATGCATACCTGCCCCATTATCTCCTGCGTGGTGACCCTTTCGCCTCAAGACTGTCCAGAGAGGCGGATATCATTGCAGCCTTTTACGTCTGTTTAATAGGAATCATGTCTGCAACAGGGAATGGCTATGTCATTTATATGACCATCAAACGCAAGACCAAGTTGAAGCCTCCTGAGCTCATGACTGTTAATCTAGCCATCTTCGACTTTGGCATATCAGTGACAGGAAAACCCTTTTTCATTGTGTCTAGTTTGTCCCACCGCTGGTTGTTCGGCTGGGAAGGTTGCCGCTTCTATGGCTGGGCAGGCTTCTTCTTTGGTTGTGGGAGCCTCATCACGATGACCGTGGTCAGTCTGGACCGGTACCTCAAGATCTGCCATCTCAGATACGGCACATGGCTTCAACGCCACCATGTCTTCCTGTGCCTGGTTTTTGTGTGGGTGTATGCAGCTTTCTGGGCCACCATGCCCCTGACTGGTTGGGGAAACTATGCCCCAGAGCCCTTCGGGACCTCCTGCACATTGGACTGGTGGCTGGCACAGGCCTCTGTGTCCGGCCAAAGCTTCGTCCTGGCCATTCTGTTCTTCTGTCTCATCCTTCCCACAGGCATCATCGTCTTCTCTTACGTCATGATTATCTTCAAAGTCAAGTCCTCTGCAAAGGAGATTTCAAACTTTGACGCCCGCATCAAAAACAGCCACAGCCTTGAGATAAAACTCACAAAGGTGGCAATGCTGATCTGTGCAGGCTTCTTGATAGCCTGGATCCCTTATGCAGTGGTGTCAGTGGTGTCAGCGTTTGGTGAACCGGACTCGGTGCCCATCCCTGTGTCTGTCATTCCCACGCTGCTGGCCAAGTCTTCAGCCATGTACAACCCCATCATCTACCAGGTGGTGAACCTGAGACGTTACTGCAGGATATCCTCCTGTTTCAAGGTCCTGAAGAAACGCAGGAATTTTAGAAAGTCAAGGTTCTACACCATCGCTGGCTCGTTAAAGGACAATCCATCAGCTAATGAAGCTGAAATCGAGATGTGACTGTGTCTAACTCTTCTACTTTGGACAGTATGCCTTGTTTCCTGCCCTCTGTGCCCTACACATACCCAATCACATGCTGCCTGTCACCTGTTATGGTATTATCTACAGCTCACCTTTGTTGCCGATGGCTCCTGAGTTCCGGCTTGTTTTTACACCCACGCCTCCCCTTACTCTGAAACACGTCTTTCCCAGAAGGTTTTGCTTATTCTGTGGAGTTGCGTTGTCTTGACCTTCTTGACTTAGTTTTTAAGTGTTACAGACACGCTGTCTTTCAATGCTATGTTACTGATTGACTCACCACGGTGTTGTTCTCATACGACGGCTCGACTGAGGTTTGAAAACGTGACACGTTTGCAAGAAATTCAAGTCAAATCTAAAGCCATAATGTTTTGTGAATCCAAATCTTACAGAAGCATAAAAAttgctataaaaatgtaaatatattttcaaatgtttctaaAACTGAAATGGAAATTTAAGCAAAAGAATATACCTGACTTGAGCCATGTCAAAAACAGACTGAGGTGTAACTGTCAAGCTCAAAGTTGTATTTTTACTGTTTGTAAAAGCTGTTGTATTTTGTACCCCCTACACCTGTGACTTGTCTACAGCTGTGGCTTGTATACAgttgaaatatctcaaaaagCACTAAATCACACCAACTTAGTTTTTCATCAGCTGTAAAGTGCACATGAAGAGATTTTATGTGGCTGTATTCAGTGAAATTGTGCACTTTACTTACAAAGCCATTCAGCATTGATAAGTTTggtgttttacacacacacacacacacacacacacacacacacacacatacacacatatatggaATTGCTGAAAAGAAGAAGACACACATTATTCATCCAATGAAACAACTCCAGAAGTTGTTTCTTTGAATGATTGAAATGTCATTCTTTAACTAACCAACTACCAAACCTACAGTTGTGGCCATGGTTACACTTATAGTTGAT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08385 OPN5; G0-opsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247823 lncRNA downstream 1520 8047500 ~ 8047938 (-) True G182983
TU247814 lncRNA downstream 7654 8040623 ~ 8041804 (-) True G182980
TU247789 lncRNA downstream 195857 7852984 ~ 7853601 (-) True G182962
TU247785 lncRNA downstream 211723 7837522 ~ 7837735 (-) True G182958
TU247784 lncRNA downstream 212661 7836593 ~ 7836797 (-) True G182957
TU247850 lncRNA upstream 64514 8191178 ~ 8191474 (-) True G183006
TU247857 lncRNA upstream 118901 8245565 ~ 8245765 (-) True G183013
TU247873 lncRNA upstream 304698 8431362 ~ 8431674 (-) True G183027
TU247940 lncRNA upstream 352248 8478912 ~ 8479346 (-) True G183042
TU247969 lncRNA upstream 644624 8771288 ~ 8771585 (-) True G183068
XM_039782002.1 mRNA downstream 461393 7444861 ~ 7588065 (-) False cnih3
XM_039782001.1 mRNA downstream 461393 7444861 ~ 7588065 (-) False cnih3
XM_039782000.1 mRNA downstream 461393 7444861 ~ 7588065 (-) True cnih3
XM_039781984.1 mRNA downstream 1248665 6762711 ~ 6800793 (-) True meis2b
XM_039781999.1 mRNA downstream 1584656 6462940 ~ 6464802 (-) True LOC120546794
XM_039781890.1 mRNA upstream 125052 8251716 ~ 8340747 (-) True LOC120546734
XM_039781889.1 mRNA upstream 125052 8251716 ~ 8340744 (-) False LOC120546734
XM_039781892.1 mRNA upstream 125052 8251716 ~ 8306809 (-) False LOC120546734
XM_039781305.1 mRNA upstream 422515 8549179 ~ 8550180 (-) True LOC120546378
XM_039781306.1 mRNA upstream 431805 8558469 ~ 8559470 (-) True LOC120546379
TU247804 other downstream 24414 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 283072 7761565 ~ 7766386 (-) True G182952
unassigned_transcript_1032 other downstream 1016056 7033330 ~ 7033402 (-) True trnak-uuu_21
unassigned_transcript_1031 other downstream 1017735 7031647 ~ 7031723 (-) True trnak-uuu_20
unassigned_transcript_1030 other downstream 1019412 7029974 ~ 7030046 (-) True trnak-uuu_19
TU247995 other upstream 657124 8783788 ~ 8787217 (-) False LOC120546397
TU248116 other upstream 1002909 9129573 ~ 9133472 (-) True G183176
TU248390 other upstream 1972939 10099603 ~ 10101061 (-) False LOC120546281
XR_005636937.1 other upstream 2375256 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other upstream 2394053 10520717 ~ 10521410 (-) True G183528

Expression Profile