RNA id: TU247969


Basic Information

Item Value
RNA id TU247969
length 298
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G183068
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 8771288 ~ 8771585 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtaaaccgagccctgggtatcctgctctgcctttgagaaaatgaaagctcaggtgggccgatctggaatcttctccttatgaggtcataaggagcaaggttacctcccctttctttgctttgcccgcccagagaatttggcctgcccatgagaaagagagagagacatcatggttttcaaacaagaaaagtggcagttggtcaaggccacacccccaacatccaccttgcccccccccctctcctcctcaatagctacagacacagaaatggcacatactaaggaaagctcattgtg

Function

GO:

id name namespace
GO:0048646 anatomical structure formation involved in morphogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247940 lncRNA downstream 291942 8478912 ~ 8479346 (-) True G183042
TU247873 lncRNA downstream 339614 8431362 ~ 8431674 (-) True G183027
TU247857 lncRNA downstream 525523 8245565 ~ 8245765 (-) True G183013
TU247850 lncRNA downstream 579814 8191178 ~ 8191474 (-) True G183006
TU247822 lncRNA downstream 721303 8049578 ~ 8049985 (-) False opn5
TU248059 lncRNA upstream 226990 8998575 ~ 8998828 (-) True G183136
TU248075 lncRNA upstream 249394 9020979 ~ 9024565 (-) False LOC120546609
XR_005636853.1 lncRNA upstream 326786 9098371 ~ 9099326 (-) True LOC120546288
TU248114 lncRNA upstream 355136 9126721 ~ 9129230 (-) True G183175
TU248119 lncRNA upstream 361951 9133536 ~ 9134536 (-) True G183177
XM_039781320.1 mRNA downstream 2264 8767999 ~ 8769024 (-) True LOC120546396
XM_039781318.1 mRNA downstream 30949 8723103 ~ 8740339 (-) True LOC120546393
XM_039781317.1 mRNA downstream 54854 8715565 ~ 8716434 (-) True LOC120546390
XM_039781316.1 mRNA downstream 94603 8675816 ~ 8676685 (-) True LOC120546389
XM_039781315.1 mRNA downstream 109976 8660443 ~ 8661312 (-) True LOC120546388
XM_039781321.1 mRNA upstream 9743 8781328 ~ 8787218 (-) True LOC120546397
XM_039781322.1 mRNA upstream 18247 8789832 ~ 8790701 (-) True LOC120546398
XM_039782894.1 mRNA upstream 145928 8917513 ~ 8931493 (-) True LOC120547332
XM_039781110.1 mRNA upstream 164339 8935924 ~ 8950403 (-) False mep1a.1
XM_039781109.1 mRNA upstream 164339 8935924 ~ 8950403 (-) True mep1a.1
TU247804 other downstream 746244 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 1004902 7761565 ~ 7766386 (-) True G182952
unassigned_transcript_1032 other downstream 1737886 7033330 ~ 7033402 (-) True trnak-uuu_21
unassigned_transcript_1031 other downstream 1739565 7031647 ~ 7031723 (-) True trnak-uuu_20
unassigned_transcript_1030 other downstream 1741242 7029974 ~ 7030046 (-) True trnak-uuu_19
TU247995 other upstream 12203 8783788 ~ 8787217 (-) False LOC120546397
TU248116 other upstream 357988 9129573 ~ 9133472 (-) True G183176
TU248390 other upstream 1328018 10099603 ~ 10101061 (-) False LOC120546281
XR_005636937.1 other upstream 1730335 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other upstream 1749132 10520717 ~ 10521410 (-) True G183528

Expression Profile