RNA id: XM_039781668.1


Basic Information

Item Value
RNA id XM_039781668.1
length 3157
RNA type mRNA
GC content 0.41
exon number 1
gene id LOC120546609
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 9020960 ~ 9024565 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaaaaaataataataataaaagaaaaaatgaggTTTCGGCTGCTTAAGAGGAATCTGCTCGCGCTGTTGGGTGTTTCCTTTGTAGTTGTGACTCTCCTGTTTTCAACACGTGTGTTATTAGTTTCCGATAATGACACAACTGTAcctaatgatgatgatgatgacgtcAGTGGGGATAATAAGTGCACGCGCTCTGGTGCCGCGGCGAAGTTTAACTTCGGCTCGCTCGCGGAGCTGACTAAGTCCGTTTACAATGCCAATTACAGGCAGTGCGTTCACAACGCGGATAGGTTCCCAGGGGAGCCCGGACTGGTGCTGGTCGTGCAGGTCCACAACAGGCCTGAATACCTCCGACTGCTCGTCAAGTCGCTGGAGAAAGCGGCCGAAGTCCACAGCTTCCTCCTCATCTTCAGCCATGACTACTTTTCAGAGGAAATGAACGCCATTGTGCAAGGGATAACTTTCTGCAAAGTCCTGCAAATCTATTTCCCCTTCAGCACTCAGCTGTATCCCGAGGAGTTTCCTGGAAAGGATCCGAGGGACTGCTCCCGAGACCTGTCCAAGGACGACGCTCTCAAAACAGGATGCCTGAACGCGGAACACCCGGACTCGTACGGACACTACAGGGAGGCGTTCATCACTCAAACCAAACACCACTGGTGGTGGAAATTGCACTTTGTGTGGGAGCGAGTGCAGGCCATGCAGGGCTACAGTGGCTTTGTAGTCTTTCTGGAGGAGGACAACTACATATTACCAGACTTTTTCCATTTCTATAAATCGATGATGGAGTTCAGGAAGAGCAGCTGCCCGGATTGTGACATGCTGTCCTTGGGCAACCACAATGGACTGACCGATTTCACCAGACTGTCCAGTAAGGTGTCGACCACTGGGTGGATGTCCACTAAACACAACATAGGCATGGCCATCTCCAGGGAGGTGTACTACAAACTGATGGGCTGCAACAACGAATTCTGCACCTATGACGACTACAACTGGGACTGGACTCTGCAGCACCTGTCGGGAACCTGCATATCGAAGCCCGTCAAAGTGCTTGCGGCGCAGGGCTCCAGGGTTCTCCACACGGGAGACTGTGGCCTTCACCAGAAGGAGAACTGCAGGCCAGAATGGGCCTCGCAGAAAGTAGAGGAGAGCCTTCTAGCGGCCAACGACGGCCTCTTCCCGCCGTCTCTTGTCCTTAATGGCGCAGAAGGAGTTGAGCACAAGGCGCACATGAAGAATGGCGGATGGGGGGATGTTCGAGACCATATTCTATGCAAAAACTACGCCAAACGTCTTTGAACTGCCACCGTTGCGCTAAGTCATGTCCTCCATTGGTATTCTGCGGATGTGCCATTCATTCATAACTTTTCAGGGTTTCAGAGGATGCAGTGggttgcgtttttttttttttcactcggGAGTGTACTAATGTTCTCTTCCAGCAAGGTCTTCGAAGAAAAGGGACCGAATCAAGTCCAAAAAAAATGCTGCTGGTACACAGCTAGACGTCagcttgttttgtgtgttttaaatcGCCAAAGCTGCACAGTTGCCAAAGACATTTTTTGAaatttgtgttgtgttgaatGCAGCCAATCATGTTGCCAGGTTTGTTTACTGTATCTCTGGGTGTTTTCACAAGCCAAaacattatacatatatacatacatacatacatacatacatacatacatgaacAAATTTGCAAttttatttgcaaatatatttttttcttgacTGGGAATGTGTTGCAAAGGGTGTTGTTAATATGCAGTTTATTCACAACAAGTTAACCCAAGTTAAAacggtgtgtttttgtgtgtgatgaatggCTGCCTGCCATTTCTTTTATGACCCATTCAGCTGGAATGCTTTTGCATGTGCTCTTTAATGGTACGATTTTTAAATTGCAACAACAAAAGTCTGTACTGTACagactttaattaaaaaaaaaaaaaaaaaagtgtaagacAATCTGAAATAGAATTGTGGGTGGGGAAGTTGTAGTTTATAcagcaatcttttttttttttttttttttttttcaagttgacCATTGACcataatgtcaaaaaaatgatttaatgcATATAATGGACTTTGTTACTGTAACCAGGGGTCTTTTTCTTTTGAGTTTAGGTCAACTGGTACCACTTACTTAATCAGTCTCCTACTCCCCACTGTAATGACCCCTGGTTGCAACAAGAGCGCTGGcttgatattgatttttttttttttttttcttttggttgtgacgcttatttgctttctgatAGGTGGAAAGTGACCTTTTGGAGTCTTGTTCAAGATCTTTTGTTCTGCAAACATCAGGGGGGATCTGTGATTTGGCATTCCTATATTTGCACCTTctgttttaatttcttttgggATATTTTATCCAAATGAAAACCGAATGAATTGTTTTTGGGTTTTATAAAAATGCATTTCTGTTCCTTTTTTCTGGCATTCGCTAATAATCCAACTATAACTGAAGTTGTGTTATTTCATTTGAATTAGTTATCAACACAAGCATATTGATGCAATTCTTGCCTTTTTAAAGCTGACAAAGTGCCTTGATTGTTATTTGTACCATTTTTAAAGAGATTTTTAAAGGTGCACTGATAACATTGTTGTTGACAAAGTGGAAATGCATTTGTAAGTGCTGGGGActtgtgtttatatatttgtatgtcTTTCTTCATGAGATGTTGAGGGGAAAATGGAATGTGAATGTctatttcacaaaaaatctTCATTGTACAATTAGGTAAAAATATTTTGCATCGCTCTGGCATCTTGTAACTGGTGACAGCAGCTCCAGATAAGTGGTTCAATCGGATATTGGTTCACCTCAGTGTGCCTTATGGAGATTCCTGGtaaaataatatgaaatgaatgtgataatgaaataaataagatttttatttcttgaaaagcacaattatttttttaaaaggaacatGGCAAAGATGGCCTAATAAATAAAGATGTACTATACTGTGTCTATGCCGGATGTTTGATTCCTTAGTTGGTTGAGAATAAGaccaactttttttgttttctatcttttctttctgATAATCACTTGAAATAGCTGTTCATTGTTCATTGTTCACCTATTGTCTGCCAAATGGAAAAATAAAAGGCTGAACTTTT

Function

GO:

id name namespace
GO:0009312 oligosaccharide biosynthetic process biological_process
GO:0005795 Golgi stack cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00736 MGAT2; alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248059 lncRNA downstream 22132 8998575 ~ 8998828 (-) True G183136
TU247969 lncRNA downstream 249375 8771288 ~ 8771585 (-) True G183068
TU247940 lncRNA downstream 541614 8478912 ~ 8479346 (-) True G183042
TU247873 lncRNA downstream 589286 8431362 ~ 8431674 (-) True G183027
TU247857 lncRNA downstream 775195 8245565 ~ 8245765 (-) True G183013
XR_005636853.1 lncRNA upstream 74255 9098371 ~ 9099326 (-) True LOC120546288
TU248114 lncRNA upstream 102605 9126721 ~ 9129230 (-) True G183175
TU248119 lncRNA upstream 109420 9133536 ~ 9134536 (-) True G183177
TU248120 lncRNA upstream 110429 9134545 ~ 9134808 (-) True G183178
TU248122 lncRNA upstream 122973 9147089 ~ 9148100 (-) True G183180
XM_039781669.1 mRNA downstream 532 9003269 ~ 9020428 (-) True brox
XM_039781670.1 mRNA downstream 541 9003269 ~ 9020419 (-) False brox
XM_039780981.1 mRNA downstream 20640 8998892 ~ 9000320 (-) True LOC120546203
XM_039781021.1 mRNA downstream 29592 8961680 ~ 8991368 (-) True LOC120546235
XM_039781110.1 mRNA downstream 70557 8935924 ~ 8950403 (-) False mep1a.1
XM_039781916.1 mRNA upstream 130908 9155024 ~ 9288203 (-) False disp1
XM_039781915.1 mRNA upstream 130908 9155024 ~ 9287977 (-) False disp1
XM_039781917.1 mRNA upstream 130908 9155024 ~ 9199285 (-) True disp1
XM_039781918.1 mRNA upstream 130908 9155024 ~ 9198799 (-) False disp1
XM_039782695.1 mRNA upstream 306368 9330484 ~ 9402765 (-) True LOC120547212
TU247995 other downstream 233743 8783788 ~ 8787217 (-) False LOC120546397
TU247804 other downstream 995916 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 1254574 7761565 ~ 7766386 (-) True G182952
unassigned_transcript_1032 other downstream 1987558 7033330 ~ 7033402 (-) True trnak-uuu_21
unassigned_transcript_1031 other downstream 1989237 7031647 ~ 7031723 (-) True trnak-uuu_20
TU248116 other upstream 105457 9129573 ~ 9133472 (-) True G183176
TU248390 other upstream 1075487 10099603 ~ 10101061 (-) False LOC120546281
XR_005636937.1 other upstream 1477804 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other upstream 1496601 10520717 ~ 10521410 (-) True G183528
TU248695 other upstream 2349992 11374108 ~ 11374615 (-) True G183650

Expression Profile