RNA id: TU248116


Basic Information

Item Value
RNA id TU248116
length 3900
RNA type TUCP
GC content 0.45
exon number 1
gene id G183176
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 9129573 ~ 9133472 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cttgtcggttattggctggaacgctggaactctgtttgttatgtttggtggtgcaggttggcgcagtttgtttttgttggcgtttgtggagcctgggctgtctacagagaccgtatttttttttacagtgtgttcaggggacaggcagctagctatgtttgctgtatgtgacgaaaaatgttgtagcctaaaaaaaggcgtgacatcgcttagagcacctttaatatcaaaaagttacgcactaaagctaaATGTGCTGAAGTAAAAATtacaacatttccctctgaaatgttgtGGGGTAGAAGTAGAgtgcattaaaagaaaaaactcaagtaaagtacctcaaatttgtacttaagtacagtacctcACTACTGTGTTGAGGTGTCAGAGAGTAACTTCTGcagcataaaaatgtaaatctaTACTTATTATTCTTGATATATATTccttctattttccttataaaCATTCCTTGCTTTTTGCTCCCTTTTTCTGAGGATTTAGAAGTTACTCTCCCAATATATCAAAATATCCATTTAACATGGACACAGACATGTTGAAGAAACCTTAGAGAAACCATTAGGAGATGTAGAAAACTCTCAGGGTAAACCTTAAtaaagaaacattttgaaaaatctaagaaaatctggaaaaagtctttaaaagaattgaaacaaatggaaaaaggagagaaaaaggtaGGGAAATGTGTGCATGTAACTCTGTTTATTCACGGCTGAGCTGCAATTCACTTCTTTCTCCACAGGGTGGGGCAGTCAGATAGTATCCAGGGCATGAATAGCTGAgagacagtggtggaagaagtatttagattctttacttaagtaaaagtactaataccacaccgTGAAAATACTCTCTTACaattaaaagtcctgcattgaaaatgtacttaaagtattacaagtaaaagtactcaatgcagaaaaatcctcacattttagaaactggaagtgatccaaactgttctgtcaatcaactaagtgtttaatcagctgatcatttcagctggacttgtaggccgtttaTATTTTTGggaagtttaatttataataaaacgtcgtatttttacaatatttccctctgaaatgtagtggagtagaagaagaaagtggcatgaaaagaaaaggctTAACCTTAAGGTTAACTGTATAACCACCATAGTAGGCAGAAGAGCTTATCCTCAATatgtaaattacattttttttttccacaaataggccaatttatctttgctattaaAATGTTAGATTCACGttgatgtatattttcagacatatattcacttttgaaaaaagaaaatttcgGAAAATGTTGTAAACACAATTTGGCGGCCCCCCCCTGCACAAACCCTGAGGACCCCTTAGTGgtcacggaccccctgttgaatatcACTGGCATAAAGTATACAATTtccaattctgtgttacatcttctaagccaacttcattccaacttatcactgctagttttacacttatgtttggaattcatggtcaataaacctcattcatattaaaatatgcctaattttgacttaaaaccCCCAGGAATTATTAATTAGTTTAGCTAAtaattaagatcagaggaacgtATGTTGATGCATAATTACAGCCTGTTTTGtgtatggaatcatccatgttatttttgggccatttggttgaaagaaccCCATATTTTTGATAAAGATATTTGaaaatgggtttttcaaaaggttaagtaaagtacaactacctcaaatttgtacttaagtacttgagtaaatggaCTTGTGataacattccaccactgctgagaGACATGTCCTTCACTCACATTTtcataatgtaataatgttCCAGCACAAACTTGAAAAAGCCAGAGCTAGTCCTAAGGCAGTGAATATCCATCTGTAAAGAAATCttgaatatgtatttgtgttgtttgtgagTTTATAGTGGCCTTATCTCCTGTGGCATCATAACCACATTACTGTCTCCCTTTGACAATTGTTTTACCGTAAAAAGTCTTTCAAAAAACTGTCCAAAAATGCCTCTATTGTTTCCGAGGCTTCTGTAACATTCACATGTCATGCTTTatgtccccccccccgcctTCTTTCCCTTTTACGCATCACTTGCTGTAAACCGTGCTTCGCCCTCCGGAGCTTTGAGCTCGCCTGCGCTCTCCATCTTCCCTCTGCCGCTGAGGATGTGATGAGCCAGACAAACCACcaacacaatcacaaacacgGTGCACAATATTATCCCCACGAGACCCCCCACTGTCACCACTGACGGCTGCCGGGTAGGCTCTGGATACGGCGCGGCTGATACTGTGGGCATGTTCGGAGTCGTGCCCGCGCCGGATCCCTCCGTGTACCCGTCACCCTCGCTTATTTTTACGCACCGGAATTCTTCAACTAGTTTATACCCCGCAGGGCACGTGCACACATAGCTTCCGAATGTGTTTTCACAACCGTGATCACAATAAGAAAAGCACTCGTCAATGTCTATACAAAACGAatgcccctctctctcctctaatATATAACCTCCAGGGCAGTCGCACAGGAACTGGTCGTTCGGGTCGCACTCGGCGGCGCATTCCTCCTTCCCACAGTGGAGAATACACTTATCAGGTGACTTTGGGTCCTCTATATATCCGTCATCACAAGAGCACGTGTAGCCACCAGGGCTGTTGGTGCAGTGGTGCTCGCACGGAGCGGACGCGCACTCGTCCACGTCAACGCACAGGCCGCCGCTCATCTTGTATCCGTCCTTGCAAACGCACTGAAACCCTTCGGTGACGCTGACGCACTTGAAGTTCTCCCCCGGACACTTGCGCTTGTCCCTGCAGTCGGTGAAGTCTGTGCACGACCTGCCGTCCCGCGCCAGCTTAAAGCCGtggtcacacatgcacgcgtAGGAGTCTCCTTTCTTGTAGCAGGCGTGCGCGCAGCGCAGAGGCAGACACGGATCCTCTGCGCTCGCTTCGCAGGTGACTTTATCCGCTGGGTTGATCGTTTGGCCCGACGGGCAGTAGCAGGAGGGCACGTCGTTGGGGGCCACTGCGCATTTGTACTCACACCCGCCTTGGTGTATCTCGCAGCTCCAGGGCGCCTGCAGCCACTGCTCCGACAAGCACACGTATTTAGTCTTAGCCGGCATCCGGATAGCGGTGCTCCCAGGCGGCAAAGACAGCACATCCTCGCCCACAAACCCCATGGGGGTCCTGTATGAGACGGTCTCGCCCTCTGCAACCGTTAGACCTTTACACGGGTCAGTGAAACTGTACTCGCACAGAAACCCCTCCGCGTGTTTCTCGCACGGCTCCTGGATCCATTTCAAGTCGTCCTTTGGGGAAACTGAGACGCAGCGATGGGAAGAACAGCTGCTGTCAAAACTCGGCGCCCAGTTGAACCAGTCACTTTGGCTGTCTTTGGTCACCCACTGGTAGCCTTTGAGCGCAGCAGCGGCGTCTGGGCAGCCGCTCGTTCGATTTAAACCGATCCAGAAGCGCCCCGTCGAGTTCCCCAACAATATATTAACAATTTCATGGGATACACTCAACCGCACCGTCATTAAGTGGCCGTCCCGAACTCTGCATTGGATCTGCGCGGTGTTGAAGTCGCTGGGTCCTTGGAACACAGTGAAACACTGAGTCCCGATGCAGTATCCGCTATTCGGCTCTATCCCGCCGCCTCTGCCCGCCAGGAAagtcaacacaaaaacaaagagtCCCGTTACTTCCTTCATGTTTGAACCGCGGCTGTGTCCGTTTAAGTTCTCGTGCATTGCGGCAGTCTATAGGCTCTTTtgtttgagaaaatgtttttctggCATTTATAACCCCCCAACTCCATGTTAGTGCTCCGGCAGAGGAAGGAAGTCGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248114 lncRNA downstream 343 9126721 ~ 9129230 (-) True G183175
XR_005636853.1 lncRNA downstream 30247 9098371 ~ 9099326 (-) True LOC120546288
TU248075 lncRNA downstream 105008 9020979 ~ 9024565 (-) False LOC120546609
TU248059 lncRNA downstream 130745 8998575 ~ 8998828 (-) True G183136
TU247969 lncRNA downstream 357988 8771288 ~ 8771585 (-) True G183068
TU248119 lncRNA upstream 64 9133536 ~ 9134536 (-) True G183177
TU248120 lncRNA upstream 1073 9134545 ~ 9134808 (-) True G183178
TU248122 lncRNA upstream 13617 9147089 ~ 9148100 (-) True G183180
TU248131 lncRNA upstream 100039 9233511 ~ 9233798 (-) True G183189
TU248156 lncRNA upstream 191775 9325247 ~ 9327288 (-) True G183214
XM_039781668.1 mRNA downstream 105457 9020960 ~ 9024116 (-) True LOC120546609
XM_039781669.1 mRNA downstream 109145 9003269 ~ 9020428 (-) True brox
XM_039781670.1 mRNA downstream 109154 9003269 ~ 9020419 (-) False brox
XM_039780981.1 mRNA downstream 129253 8998892 ~ 9000320 (-) True LOC120546203
XM_039781021.1 mRNA downstream 138205 8961680 ~ 8991368 (-) True LOC120546235
XM_039781916.1 mRNA upstream 21552 9155024 ~ 9288203 (-) False disp1
XM_039781915.1 mRNA upstream 21552 9155024 ~ 9287977 (-) False disp1
XM_039781917.1 mRNA upstream 21552 9155024 ~ 9199285 (-) True disp1
XM_039781918.1 mRNA upstream 21552 9155024 ~ 9198799 (-) False disp1
XM_039782695.1 mRNA upstream 197012 9330484 ~ 9402765 (-) True LOC120547212
TU247995 other downstream 342356 8783788 ~ 8787217 (-) False LOC120546397
TU247804 other downstream 1104529 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 1363187 7761565 ~ 7766386 (-) True G182952
unassigned_transcript_1032 other downstream 2096171 7033330 ~ 7033402 (-) True trnak-uuu_21
unassigned_transcript_1031 other downstream 2097850 7031647 ~ 7031723 (-) True trnak-uuu_20
TU248390 other upstream 966131 10099603 ~ 10101061 (-) False LOC120546281
XR_005636937.1 other upstream 1368448 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other upstream 1387245 10520717 ~ 10521410 (-) True G183528
TU248695 other upstream 2240636 11374108 ~ 11374615 (-) True G183650
unassigned_transcript_1080 other upstream 3449697 12583169 ~ 12583241 (-) True trnat-ugu_2

Expression Profile